Variant report

Variant	rs10468050
Chromosome Location	chr15:72073939-72073940
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72066942..72069742-chr15:72072883..72075407,2	K562	blood:
2	chr15:72066942..72068952-chr15:72072883..72075558,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1054259	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1109744	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3087532	0.83[ASN][1000 genomes]
rs34679273	0.87[ASN][1000 genomes]
rs35171275	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7180325	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7402085	1.00[CEU][hapmap]
rs7495064	0.89[CHB][hapmap]
rs8035263	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72030400-72075800	Weak transcription	Right Ventricle	heart
2	chr15:72054600-72075000	Weak transcription	Stomach Mucosa	stomach
3	chr15:72054800-72081400	Weak transcription	HMEC	breast
4	chr15:72057800-72077200	Weak transcription	Gastric	stomach
5	chr15:72058000-72075200	Weak transcription	Aorta	Aorta
6	chr15:72058200-72075800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:72064400-72082000	Weak transcription	Pancreas	Pancrea
8	chr15:72064600-72080800	Weak transcription	Fetal Intestine Large	intestine
9	chr15:72064600-72082400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:72064600-72082400	Weak transcription	NHEK	skin
11	chr15:72069400-72074000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:72070200-72075200	Weak transcription	Right Atrium	heart
13	chr15:72070200-72082000	Weak transcription	Esophagus	oesophagus
14	chr15:72070200-72082400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:72070400-72075200	Weak transcription	Lung	lung
16	chr15:72070800-72082200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:72071000-72074000	Weak transcription	Left Ventricle	heart
18	chr15:72071200-72080800	Weak transcription	Fetal Intestine Small	intestine
19	chr15:72071200-72081800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:72071600-72074400	Enhancers	HSMM	muscle
21	chr15:72071600-72074600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:72071800-72074200	Enhancers	NH-A	brain
23	chr15:72072000-72093200	Weak transcription	Fetal Stomach	stomach
24	chr15:72072200-72074000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:72072200-72074000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:72072400-72074000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:72072400-72074600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:72072600-72074400	Flanking Active TSS	GM12878-XiMat	blood
29	chr15:72072800-72074800	Weak transcription	Fetal Heart	heart
30	chr15:72072800-72075200	Enhancers	A549	lung
31	chr15:72072800-72082400	Weak transcription	HSMMtube	muscle
32	chr15:72073000-72074000	Enhancers	HUVEC	blood vessel
33	chr15:72073200-72074000	Enhancers	Osteobl	bone
34	chr15:72073200-72074800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr15:72073200-72075200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr15:72073200-72075800	Weak transcription	Fetal Muscle Leg	muscle
37	chr15:72073200-72082000	Weak transcription	Fetal Kidney	kidney
38	chr15:72073400-72074200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:72073800-72074000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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