Variant report

Variant	rs7402085
Chromosome Location	chr15:72084834-72084835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr15:72084798-72085349	ECC-1	luminal epithelium:	n/a	n/a
2	TEAD4	chr15:72084570-72085224	ECC-1	luminal epithelium:	n/a	n/a
3	MAX	chr15:72084786-72085294	ECC-1	luminal epithelium:	n/a	n/a
4	TEAD4	chr15:72084683-72085332	ECC-1	luminal epithelium:	n/a	n/a
5	TCF12	chr15:72084721-72085282	ECC-1	luminal epithelium:	n/a	n/a
6	MAX	chr15:72084717-72085346	ECC-1	luminal epithelium:	n/a	n/a
7	TCF12	chr15:72084685-72085345	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72037094..72041043-chr15:72082169..72084915,5	MCF-7	breast:

No data

Variant related genes	Relation type
NR2E3	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10468050	1.00[CEU][hapmap]
rs1109744	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11633167	0.83[YRI][hapmap]
rs3784310	0.82[YRI][hapmap]
rs6494973	0.82[YRI][hapmap]
rs7180325	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7496582	0.83[YRI][hapmap]
rs8035263	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72072000-72093200	Weak transcription	Fetal Stomach	stomach
2	chr15:72076000-72099000	Weak transcription	Right Atrium	heart
3	chr15:72079400-72085200	Enhancers	HUVEC	blood vessel
4	chr15:72080800-72085200	Enhancers	Fetal Intestine Large	intestine
5	chr15:72080800-72085200	Enhancers	Placenta	Placenta
6	chr15:72081400-72085200	Enhancers	HMEC	breast
7	chr15:72081800-72085200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:72081800-72085200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:72081800-72085200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr15:72082000-72085200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:72082000-72085400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:72082200-72085200	Enhancers	NH-A	brain
13	chr15:72082200-72085400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr15:72082200-72085400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:72082400-72085200	Enhancers	Osteobl	bone
16	chr15:72082400-72085400	Enhancers	NHEK	skin
17	chr15:72083200-72085000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:72083600-72085200	Enhancers	HSMMtube	muscle
19	chr15:72083800-72085200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:72083800-72085200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:72083800-72085200	Enhancers	HSMM	muscle
22	chr15:72083800-72085200	Enhancers	NHDF-Ad	bronchial
23	chr15:72083800-72085400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:72084000-72085200	Enhancers	A549	lung
25	chr15:72084400-72085200	Enhancers	Fetal Heart	heart
26	chr15:72084400-72085200	Enhancers	Left Ventricle	heart
27	chr15:72084600-72085200	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr15:72084600-72085600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr15:72084800-72085200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:72084800-72097000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr15:72084800-72098800	Weak transcription	Pancreas	Pancrea

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