Variant report

Variant	rs10468435
Chromosome Location	chr17:66786785-66786786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11657199	1.00[ASN][1000 genomes]
rs12451043	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1550645	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34907620	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4968946	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968949	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7207331	0.88[ASN][1000 genomes]
rs8074847	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891808	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9897902	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899443	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899682	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9901473	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9902652	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9903417	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911813	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66768600-66789200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr17:66780400-66786800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr17:66780400-66787600	Weak transcription	Right Atrium	heart
4	chr17:66784800-66789800	Enhancers	HepG2	liver
5	chr17:66785000-66790600	Enhancers	Liver	Liver
6	chr17:66786000-66787800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr17:66786200-66786800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr17:66786400-66786800	ZNF genes & repeats	Spleen	Spleen
9	chr17:66786400-66787000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr17:66786400-66788000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr17:66786400-66788200	Enhancers	Fetal Muscle Leg	muscle
12	chr17:66786400-66791000	Enhancers	Adipose Nuclei	Adipose
13	chr17:66786400-66791000	Enhancers	NHDF-Ad	bronchial
14	chr17:66786400-66791200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr17:66786400-66791800	Enhancers	Fetal Lung	lung
16	chr17:66786400-66791800	Enhancers	NHLF	lung
17	chr17:66786600-66786800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr17:66786600-66786800	Enhancers	Stomach Smooth Muscle	stomach
19	chr17:66786600-66787200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr17:66786600-66787200	Enhancers	Fetal Muscle Trunk	muscle
21	chr17:66786600-66787400	Enhancers	Right Ventricle	heart
22	chr17:66786600-66787400	Enhancers	HSMMtube	muscle
23	chr17:66786600-66788400	Enhancers	Ovary	ovary
24	chr17:66786600-66791200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links