Variant report

Variant	rs9891808
Chromosome Location	chr17:66790027-66790028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66789980..66791367-chr17:66902438..66903724,8	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10468435	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657199	1.00[ASN][1000 genomes]
rs12451043	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1550645	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34907620	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4968946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968949	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7207331	0.88[ASN][1000 genomes]
rs8074847	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9897902	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899443	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899682	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9901473	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9902652	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9903417	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911813	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv575927	chr17:66787428-66817866	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66785000-66790600	Enhancers	Liver	Liver
2	chr17:66786400-66791000	Enhancers	Adipose Nuclei	Adipose
3	chr17:66786400-66791000	Enhancers	NHDF-Ad	bronchial
4	chr17:66786400-66791200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr17:66786400-66791800	Enhancers	Fetal Lung	lung
6	chr17:66786400-66791800	Enhancers	NHLF	lung
7	chr17:66786600-66791200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr17:66786800-66791000	Enhancers	Osteobl	bone
9	chr17:66787000-66791400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr17:66787000-66791800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr17:66787200-66791800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr17:66787800-66791600	Enhancers	Fetal Stomach	stomach
13	chr17:66788000-66790600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr17:66788000-66790800	Enhancers	Brain Anterior Caudate	brain
15	chr17:66788000-66791000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr17:66788000-66791200	Enhancers	Brain Hippocampus Middle	brain
17	chr17:66788000-66791200	Enhancers	Brain Substantia Nigra	brain
18	chr17:66788000-66791200	Enhancers	Hela-S3	cervix
19	chr17:66788000-66791600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:66788000-66805800	Weak transcription	Right Atrium	heart
21	chr17:66788200-66790200	Weak transcription	Placenta	Placenta
22	chr17:66788200-66790600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr17:66788200-66790600	Weak transcription	Spleen	Spleen
24	chr17:66788200-66791000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr17:66788200-66791200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr17:66788400-66791000	Enhancers	Brain Cingulate Gyrus	brain
27	chr17:66788400-66791200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr17:66788400-66791600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr17:66788400-66791600	Enhancers	A549	lung
30	chr17:66788600-66790200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr17:66788600-66791400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr17:66788600-66791800	Enhancers	HUVEC	blood vessel
33	chr17:66788800-66791400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr17:66788800-66791400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr17:66788800-66791600	Enhancers	Ovary	ovary
36	chr17:66789000-66790200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr17:66789000-66790400	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr17:66789000-66790400	Enhancers	Colon Smooth Muscle	Colon
39	chr17:66789000-66791000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr17:66789000-66791200	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr17:66789200-66790400	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr17:66789200-66790400	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr17:66789200-66790800	Enhancers	Pancreas	Pancrea
44	chr17:66789200-66791200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr17:66789200-66791200	Enhancers	Fetal Intestine Small	intestine
46	chr17:66789200-66791400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr17:66789200-66791600	Enhancers	K562	blood
48	chr17:66789200-66791800	Enhancers	Brain Angular Gyrus	brain
49	chr17:66789200-66791800	Enhancers	Fetal Intestine Large	intestine
50	chr17:66789200-66792400	Enhancers	Fetal Muscle Leg	muscle

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