Variant report

Variant	rs10470063
Chromosome Location	chr20:15904046-15904047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12624883	1.00[EUR][1000 genomes]
rs12624950	0.81[AMR][1000 genomes]
rs12626063	0.81[AMR][1000 genomes]
rs16996501	1.00[EUR][1000 genomes]
rs16996509	1.00[EUR][1000 genomes]
rs2206714	1.00[EUR][1000 genomes]
rs6043505	1.00[EUR][1000 genomes]
rs6105487	0.88[AMR][1000 genomes]
rs6105488	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6105493	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6105500	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6105505	1.00[EUR][1000 genomes]
rs6110804	1.00[EUR][1000 genomes]
rs6110829	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6110831	0.94[AMR][1000 genomes]
rs7265153	0.88[AMR][1000 genomes]
rs73246245	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15884400-15917400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:15897800-15907600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr20:15903800-15904800	Enhancers	GM12878-XiMat	blood
4	chr20:15903800-15905400	Enhancers	Primary B cells from peripheral blood	blood
5	chr20:15904000-15905800	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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