Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10470063	1.00[EUR][1000 genomes]
rs16996501	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16996509	1.00[EUR][1000 genomes]
rs201214	1.00[JPT][hapmap]
rs2327965	0.80[YRI][hapmap]
rs34248224	1.00[ASN][1000 genomes]
rs35288350	1.00[ASN][1000 genomes]
rs41530549	1.00[MEX][hapmap]
rs6034277	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6034282	1.00[MEX][hapmap]
rs6034323	1.00[MEX][hapmap]
rs6043503	1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043504	1.00[EUR][1000 genomes]
rs6043505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043510	1.00[JPT][hapmap]
rs6043515	1.00[JPT][hapmap];0.92[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs6110804	1.00[EUR][1000 genomes]
rs73246211	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73246214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73246245	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv912791	chr20:15702037-15759361	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv912792	chr20:15724399-15749292	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15735600-15737600	Enhancers	Fetal Brain Male	brain
2	chr20:15735800-15737200	Enhancers	Brain Germinal Matrix	brain
3	chr20:15736400-15737400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr20:15736400-15737600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr20:15736600-15736800	Enhancers	Brain Angular Gyrus	brain
6	chr20:15736600-15736800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr20:15736600-15736800	Flanking Active TSS	Brain Substantia Nigra	brain
8	chr20:15736600-15737000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr20:15736600-15737200	Flanking Active TSS	Brain Hippocampus Middle	brain
10	chr20:15736600-15737400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr20:15736600-15737600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
12	chr20:15736600-15737800	Active TSS	Fetal Brain Female	brain
13	chr20:15736600-15738400	Enhancers	Primary B cells from peripheral blood	blood

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