Variant report

Variant	rs6034277
Chromosome Location	chr20:15721259-15721260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs201214	1.00[JPT][hapmap]
rs2206714	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34248224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288350	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043503	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6043505	1.00[ASN][1000 genomes]
rs6043507	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes]
rs6043510	1.00[JPT][hapmap]
rs6043515	1.00[JPT][hapmap]
rs73246211	1.00[ASN][1000 genomes]
rs73246214	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv912791	chr20:15702037-15759361	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15719800-15721600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:15720000-15721600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr20:15720400-15721400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr20:15720400-15722000	Enhancers	HMEC	breast
5	chr20:15720600-15721600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr20:15720600-15721600	Enhancers	NHEK	skin
7	chr20:15720800-15723200	Weak transcription	Hela-S3	cervix
8	chr20:15721000-15721600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr20:15721200-15723600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr20:15721200-15724200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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