Variant report
Variant | rs6043515 |
---|---|
Chromosome Location | chr20:15734759-15734760 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10470063 | 1.00[EUR][1000 genomes] |
rs16996501 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
rs16996509 | 1.00[EUR][1000 genomes] |
rs201214 | 1.00[JPT][hapmap] |
rs2206714 | 1.00[JPT][hapmap];0.92[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34248224 | 1.00[ASN][1000 genomes] |
rs35288350 | 1.00[ASN][1000 genomes] |
rs6034277 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs6043503 | 1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6043504 | 1.00[EUR][1000 genomes] |
rs6043505 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6043510 | 1.00[JPT][hapmap] |
rs6110696 | 1.00[MEX][hapmap] |
rs6110804 | 1.00[EUR][1000 genomes] |
rs73246211 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73246214 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73246245 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv912791 | chr20:15702037-15759361 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv912792 | chr20:15724399-15749292 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |