Variant report

Variant	rs6034282
Chromosome Location	chr20:15737321-15737322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2206714	1.00[MEX][hapmap]
rs41530549	1.00[MEX][hapmap]
rs6034323	1.00[MEX][hapmap]
rs6043519	0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv912791	chr20:15702037-15759361	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv912792	chr20:15724399-15749292	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15735600-15737600	Enhancers	Fetal Brain Male	brain
2	chr20:15736400-15737400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr20:15736400-15737600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr20:15736600-15737400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr20:15736600-15737600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
6	chr20:15736600-15737800	Active TSS	Fetal Brain Female	brain
7	chr20:15736600-15738400	Enhancers	Primary B cells from peripheral blood	blood
8	chr20:15736800-15737600	Enhancers	Brain Cingulate Gyrus	brain
9	chr20:15736800-15740800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr20:15737000-15737400	Flanking Active TSS	Brain Substantia Nigra	brain
11	chr20:15737000-15740400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr20:15737200-15737400	Enhancers	Brain Angular Gyrus	brain
13	chr20:15737200-15737400	Flanking Active TSS	Brain Anterior Caudate	brain
14	chr20:15737200-15737800	Enhancers	Brain Hippocampus Middle	brain
15	chr20:15737200-15738200	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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