Variant report

Variant	rs10473068
Chromosome Location	chr5:37793082-37793083
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10054159	1.00[ASN][1000 genomes]
rs10063743	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070843	1.00[ASN][1000 genomes]
rs10941365	0.99[ASN][1000 genomes]
rs2910704	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2973041	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2973042	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs60262907	0.99[ASN][1000 genomes]
rs7730024	1.00[ASN][1000 genomes]
rs9283747	0.97[ASN][1000 genomes]
rs9292673	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37790800-37793400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:37791800-37793400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:37792600-37793400	Enhancers	NHDF-Ad	bronchial
4	chr5:37792600-37793600	Enhancers	Osteobl	bone
5	chr5:37792800-37793400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:37792800-37793400	Enhancers	HSMM	muscle
7	chr5:37792800-37793400	Enhancers	NH-A	brain
8	chr5:37792800-37793400	Enhancers	NHLF	lung
9	chr5:37792800-37793600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:37792800-37793600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:37793000-37793200	Enhancers	HMEC	breast
12	chr5:37793000-37793200	Enhancers	HSMMtube	muscle
13	chr5:37793000-37793400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:37793000-37793600	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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