Variant report
| Variant | rs10475041 |
|---|---|
| Chromosome Location | chr5:15219156-15219157 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:15217079..15219717-chr5:15220114..15222884,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1446041 | 1.00[ASN][1000 genomes] |
| rs1502037 | 1.00[ASN][1000 genomes] |
| rs1502038 | 1.00[ASN][1000 genomes] |
| rs2455490 | 1.00[ASN][1000 genomes] |
| rs251538 | 1.00[ASN][1000 genomes] |
| rs2652759 | 1.00[ASN][1000 genomes] |
| rs2652761 | 1.00[ASN][1000 genomes] |
| rs28287 | 1.00[ASN][1000 genomes] |
| rs301080 | 1.00[ASN][1000 genomes] |
| rs303339 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs32440 | 1.00[ASN][1000 genomes] |
| rs32445 | 1.00[ASN][1000 genomes] |
| rs32451 | 1.00[ASN][1000 genomes] |
| rs32452 | 1.00[ASN][1000 genomes] |
| rs32453 | 1.00[ASN][1000 genomes] |
| rs32454 | 1.00[ASN][1000 genomes] |
| rs32455 | 1.00[ASN][1000 genomes] |
| rs32456 | 1.00[ASN][1000 genomes] |
| rs32463 | 1.00[ASN][1000 genomes] |
| rs32464 | 1.00[ASN][1000 genomes] |
| rs32466 | 1.00[ASN][1000 genomes] |
| rs32467 | 1.00[ASN][1000 genomes] |
| rs6868543 | 1.00[ASN][1000 genomes] |
| rs6873180 | 1.00[ASN][1000 genomes] |
| rs836147 | 1.00[ASN][1000 genomes] |
| rs836148 | 1.00[ASN][1000 genomes] |
| rs836149 | 1.00[ASN][1000 genomes] |
| rs856751 | 1.00[ASN][1000 genomes] |
| rs863162 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530221 | chr5:14859687-15364470 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 2 | nsv516929 | chr5:15087791-15870300 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv1023068 | chr5:15095221-15863583 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv869040 | chr5:15097602-15866117 | Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 5 | nsv881665 | chr5:15149009-15317509 | Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv530222 | chr5:15151662-15851485 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 7 | nsv830213 | chr5:15181147-15322203 | Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 8 | nsv965595 | chr5:15208976-15219649 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10475041 | CRYM | trans | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:15218600-15222000 | Enhancers | Placenta | Placenta |
