Variant report

Variant	rs28287
Chromosome Location	chr5:15105928-15105929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:15105600..15106389-chr5:15824138..15824978,2	MCF-7	breast:
2	chr5:15105601..15106226-chr5:15383297..15383849,2	MCF-7	breast:
3	chr5:15105755..15106486-chr5:15995296..15996076,4	MCF-7	breast:
4	chr5:15105857..15106576-chr5:15791048..15791750,2	MCF-7	breast:
5	chr5:15105640..15106588-chr5:15183349..15184165,3	MCF-7	breast:
6	chr5:15105803..15106922-chr5:15183322..15184199,7	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10475041	1.00[ASN][1000 genomes]
rs11741614	1.00[ASN][1000 genomes]
rs11750471	1.00[ASN][1000 genomes]
rs1446041	1.00[ASN][1000 genomes]
rs1502037	1.00[ASN][1000 genomes]
rs1502038	1.00[ASN][1000 genomes]
rs16903776	1.00[ASN][1000 genomes]
rs17342417	1.00[ASN][1000 genomes]
rs2455490	1.00[ASN][1000 genomes]
rs251538	1.00[ASN][1000 genomes]
rs2652759	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2652761	1.00[ASN][1000 genomes]
rs301080	1.00[ASN][1000 genomes]
rs32440	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32445	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32446	0.94[CEU][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs32448	0.94[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs32449	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs32450	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs32451	1.00[ASN][1000 genomes]
rs32452	1.00[ASN][1000 genomes]
rs32453	1.00[ASN][1000 genomes]
rs32454	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32455	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32456	1.00[CHD][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs32463	1.00[ASN][1000 genomes]
rs32464	1.00[ASN][1000 genomes]
rs32466	1.00[ASN][1000 genomes]
rs32467	1.00[ASN][1000 genomes]
rs62356079	1.00[ASN][1000 genomes]
rs62356080	1.00[ASN][1000 genomes]
rs62356081	1.00[ASN][1000 genomes]
rs62356082	1.00[ASN][1000 genomes]
rs6866660	1.00[ASN][1000 genomes]
rs6868543	1.00[ASN][1000 genomes]
rs6873180	1.00[ASN][1000 genomes]
rs6888138	1.00[ASN][1000 genomes]
rs7708423	1.00[ASN][1000 genomes]
rs7708528	1.00[ASN][1000 genomes]
rs7727179	1.00[ASN][1000 genomes]
rs836147	1.00[ASN][1000 genomes]
rs836148	1.00[ASN][1000 genomes]
rs836149	1.00[ASN][1000 genomes]
rs856751	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs863162	1.00[ASN][1000 genomes]
rs9687484	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv432717	chr5:14887400-15126500	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1017579	chr5:14888997-15194335	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15103400-15108400	Weak transcription	Placenta	Placenta
2	chr5:15103800-15106400	Weak transcription	Fetal Heart	heart
3	chr5:15105600-15107000	Enhancers	Pancreatic Islets	Pancreatic Islet

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