Variant report

Variant	rs32448
Chromosome Location	chr5:15117358-15117359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr5:15117121-15117445	Hela-S3	cervix:	n/a	n/a
2	MAX	chr5:15116964-15117456	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000249332	TF binding region

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10073983	0.92[ASN][1000 genomes]
rs1446038	0.85[ASN][1000 genomes]
rs1446039	0.85[ASN][1000 genomes]
rs17521454	0.81[ASN][1000 genomes]
rs1838745	0.92[ASN][1000 genomes]
rs1910081	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1910082	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1948774	0.85[ASN][1000 genomes]
rs1948775	0.85[ASN][1000 genomes]
rs1948776	0.85[ASN][1000 genomes]
rs2121183	0.92[ASN][1000 genomes]
rs2134255	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2173979	0.85[ASN][1000 genomes]
rs2592002	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2592003	0.85[ASN][1000 genomes]
rs2592004	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2652746	0.85[ASN][1000 genomes]
rs2652748	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2652757	0.96[ASN][1000 genomes]
rs2652758	0.96[ASN][1000 genomes]
rs2652759	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28287	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs32440	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs32443	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs32444	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs32445	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs32446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32449	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32450	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32454	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs32455	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs32456	0.86[MEX][hapmap]
rs55883840	0.81[ASN][1000 genomes]
rs56766262	0.92[ASN][1000 genomes]
rs73054103	0.92[ASN][1000 genomes]
rs7706758	0.92[ASN][1000 genomes]
rs7713464	0.85[ASN][1000 genomes]
rs7730839	0.85[ASN][1000 genomes]
rs856749	0.85[ASN][1000 genomes]
rs856751	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs865059	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv432717	chr5:14887400-15126500	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1017579	chr5:14888997-15194335	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15116600-15118400	Enhancers	Placenta	Placenta
2	chr5:15117000-15117400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:15117000-15118000	Enhancers	Fetal Lung	lung
4	chr5:15117200-15117800	Enhancers	Colon Smooth Muscle	Colon
5	chr5:15117200-15118800	Enhancers	Fetal Stomach	stomach

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