Variant report

Variant	rs2652758
Chromosome Location	chr5:15070593-15070594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10043444	0.81[EUR][1000 genomes]
rs10073983	0.96[ASN][1000 genomes]
rs13357328	0.82[EUR][1000 genomes]
rs1446038	0.81[ASN][1000 genomes]
rs1446039	0.81[ASN][1000 genomes]
rs1838745	0.96[ASN][1000 genomes]
rs1910081	0.81[ASN][1000 genomes]
rs1910082	0.81[ASN][1000 genomes]
rs1948774	0.81[ASN][1000 genomes]
rs1948775	0.81[ASN][1000 genomes]
rs1948776	0.81[ASN][1000 genomes]
rs2121183	0.96[ASN][1000 genomes]
rs2134255	0.81[ASN][1000 genomes]
rs2173979	0.81[ASN][1000 genomes]
rs2592000	0.85[EUR][1000 genomes]
rs2592003	0.81[ASN][1000 genomes]
rs2592004	0.81[ASN][1000 genomes]
rs2652746	0.81[ASN][1000 genomes]
rs2652748	0.81[ASN][1000 genomes]
rs2652757	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs30537	0.91[EUR][1000 genomes]
rs30539	0.91[EUR][1000 genomes]
rs30549	0.85[EUR][1000 genomes]
rs32443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs32444	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs32445	0.94[CEU][hapmap]
rs32446	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs32448	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs32449	0.96[ASN][1000 genomes]
rs32450	0.96[ASN][1000 genomes]
rs32454	1.00[CEU][hapmap]
rs32466	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs42550	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs5010555	0.81[EUR][1000 genomes]
rs5010556	0.81[EUR][1000 genomes]
rs56766262	0.96[ASN][1000 genomes]
rs59356093	0.81[EUR][1000 genomes]
rs6554868	0.81[EUR][1000 genomes]
rs6862081	0.80[EUR][1000 genomes]
rs6881461	0.80[EUR][1000 genomes]
rs73054103	0.96[ASN][1000 genomes]
rs7706758	0.96[ASN][1000 genomes]
rs7713464	0.81[ASN][1000 genomes]
rs7715918	0.82[EUR][1000 genomes]
rs7716510	0.82[EUR][1000 genomes]
rs7727180	0.81[EUR][1000 genomes]
rs7727670	0.81[EUR][1000 genomes]
rs7730839	0.81[ASN][1000 genomes]
rs856749	0.81[ASN][1000 genomes]
rs865059	0.81[ASN][1000 genomes]
rs9687138	0.81[EUR][1000 genomes]
rs9687144	0.81[EUR][1000 genomes]
rs9687159	0.81[EUR][1000 genomes]
rs9688320	0.81[EUR][1000 genomes]
rs9688328	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv432717	chr5:14887400-15126500	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1017579	chr5:14888997-15194335	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15069400-15070600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:15069800-15070800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:15070000-15074800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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