Variant report

Variant	rs62356079
Chromosome Location	chr5:15000062-15000063
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14998977..15001072-chr5:15002735..15004861,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10513194	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11741614	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11744215	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11750471	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446041	1.00[ASN][1000 genomes]
rs1502037	1.00[ASN][1000 genomes]
rs1502038	1.00[ASN][1000 genomes]
rs16903773	0.84[EUR][1000 genomes]
rs16903776	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17342417	1.00[ASN][1000 genomes]
rs2455490	1.00[ASN][1000 genomes]
rs251538	1.00[ASN][1000 genomes]
rs2652759	1.00[ASN][1000 genomes]
rs2652761	1.00[ASN][1000 genomes]
rs28287	1.00[ASN][1000 genomes]
rs301080	1.00[ASN][1000 genomes]
rs32440	1.00[ASN][1000 genomes]
rs32445	1.00[ASN][1000 genomes]
rs32451	1.00[ASN][1000 genomes]
rs32452	1.00[ASN][1000 genomes]
rs32453	1.00[ASN][1000 genomes]
rs32454	1.00[ASN][1000 genomes]
rs32455	1.00[ASN][1000 genomes]
rs32456	1.00[ASN][1000 genomes]
rs32463	1.00[ASN][1000 genomes]
rs32464	1.00[ASN][1000 genomes]
rs32466	1.00[ASN][1000 genomes]
rs32467	1.00[ASN][1000 genomes]
rs57219003	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62356077	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62356080	1.00[ASN][1000 genomes]
rs62356081	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62356082	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866660	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867275	0.84[EUR][1000 genomes]
rs6868543	1.00[ASN][1000 genomes]
rs6873180	1.00[ASN][1000 genomes]
rs6888138	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708423	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708528	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727179	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs836147	1.00[ASN][1000 genomes]
rs836148	1.00[ASN][1000 genomes]
rs836149	1.00[ASN][1000 genomes]
rs856751	1.00[ASN][1000 genomes]
rs863162	1.00[ASN][1000 genomes]
rs9312876	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9687484	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv432717	chr5:14887400-15126500	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1017579	chr5:14888997-15194335	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv461982	chr5:14943456-15044842	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv597262	chr5:14943456-15044842	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv470991	chr5:14949696-15022112	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv524142	chr5:14986700-15018537	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv20919	chr5:14995242-15000583	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14994600-15008600	Weak transcription	Placenta	Placenta
2	chr5:14996600-15000200	Enhancers	Primary B cells from cord blood	blood
3	chr5:14996600-15000200	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:14996600-15000600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:14999400-15000200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:14999400-15000200	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr5:14999400-15000200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr5:14999600-15000200	Enhancers	Fetal Intestine Small	intestine
9	chr5:14999800-15000200	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr5:14999800-15002800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr5:15000000-15000200	Enhancers	Monocytes-CD14+_RO01746	blood

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