The 2.0 version of rSNPBase

Variant report

Variant rs17342417
Chromosome Location chr5:15005238-15005239
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:14994600-15008600 Weak transcription Placenta Placenta
2 chr5:15000200-15007800 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr5:15001400-15008600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr5:15003000-15008000 Weak transcription Aorta Aorta
5 chr5:15003000-15008000 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr5:15003200-15008200 Weak transcription Brain Substantia Nigra brain
7 chr5:15003200-15008600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr5:15003800-15007800 Weak transcription Placenta Amnion Placenta Amnion
9 chr5:15004000-15006600 Weak transcription Osteobl bone
10 chr5:15004000-15008000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr5:15004000-15008000 Weak transcription HepG2 liver
12 chr5:15004000-15008000 Weak transcription HMEC breast
13 chr5:15004000-15008400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr5:15004000-15008400 Weak transcription Duodenum Mucosa Duodenum
15 chr5:15004200-15008000 Weak transcription Liver Liver
16 chr5:15004200-15008000 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr5:15004200-15008000 Weak transcription Stomach Mucosa stomach
18 chr5:15004200-15008600 Weak transcription Rectal Smooth Muscle rectum
19 chr5:15005000-15006200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr5:15005000-15006800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr5:15005000-15008800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr5:15005000-15009200 Weak transcription Brain Angular Gyrus brain
23 chr5:15005200-15006400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr5:15005200-15006400 Weak transcription A549 lung
25 chr5:15005200-15007600 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr5:15005200-15007600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr5:15005200-15007800 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr5:15005200-15007800 Weak transcription Hela-S3 cervix
29 chr5:15005200-15008000 Weak transcription NH-A brain
30 chr5:15005200-15008200 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr5:15005200-15008600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr5:15005200-15008800 Weak transcription Fetal Heart heart
33 chr5:15005200-15008800 Weak transcription Left Ventricle heart
34 chr5:15005200-15008800 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015