Variant report

Variant	rs10475070
Chromosome Location	chr5:15957531-15957532
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10037390	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10041092	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13357073	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1354183	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16867861	1.00[EUR][1000 genomes]
rs16867864	1.00[EUR][1000 genomes]
rs16867867	1.00[EUR][1000 genomes]
rs17525353	1.00[EUR][1000 genomes]
rs1875547	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1875548	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59174236	1.00[EUR][1000 genomes]
rs59606669	1.00[EUR][1000 genomes]
rs62348126	1.00[EUR][1000 genomes]
rs62348127	1.00[EUR][1000 genomes]
rs62348128	1.00[EUR][1000 genomes]
rs62348129	1.00[EUR][1000 genomes]
rs62348130	1.00[EUR][1000 genomes]
rs62348131	1.00[EUR][1000 genomes]
rs62348154	1.00[EUR][1000 genomes]
rs62348155	1.00[EUR][1000 genomes]
rs62348156	1.00[EUR][1000 genomes]
rs62348157	0.87[EUR][1000 genomes]
rs62348158	1.00[EUR][1000 genomes]
rs62348504	0.93[EUR][1000 genomes]
rs62348505	0.93[EUR][1000 genomes]
rs62348508	0.87[EUR][1000 genomes]
rs62349962	0.93[EUR][1000 genomes]
rs73040691	1.00[EUR][1000 genomes]
rs73040701	1.00[EUR][1000 genomes]
rs7709814	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs981590	0.82[AMR][1000 genomes]
rs981592	0.82[AMR][1000 genomes]
rs993537	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv4735	chr5:15916346-15961432	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15938400-15958000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:15940000-15959000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:15942200-15957800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:15951400-15959800	Weak transcription	Fetal Muscle Leg	muscle
5	chr5:15957000-15957600	Enhancers	Fetal Stomach	stomach
6	chr5:15957400-15957600	Enhancers	Right Atrium	heart
7	chr5:15957400-15958600	Weak transcription	Fetal Lung	lung
8	chr5:15957400-15959800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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