Variant report

Variant	rs993537
Chromosome Location	chr5:16013998-16013999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10037390	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10041092	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10475070	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13357073	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1354183	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16867861	0.87[EUR][1000 genomes]
rs16867864	0.87[EUR][1000 genomes]
rs16867867	0.87[EUR][1000 genomes]
rs17525353	0.87[EUR][1000 genomes]
rs1875547	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1875548	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28552791	0.86[AFR][1000 genomes]
rs59174236	0.87[EUR][1000 genomes]
rs59606669	0.87[EUR][1000 genomes]
rs62348126	0.87[EUR][1000 genomes]
rs62348127	0.87[EUR][1000 genomes]
rs62348128	0.87[EUR][1000 genomes]
rs62348129	0.87[EUR][1000 genomes]
rs62348130	0.87[EUR][1000 genomes]
rs62348131	0.87[EUR][1000 genomes]
rs62348154	0.87[EUR][1000 genomes]
rs62348155	0.87[EUR][1000 genomes]
rs62348156	0.87[EUR][1000 genomes]
rs62348158	0.87[EUR][1000 genomes]
rs62348504	0.94[EUR][1000 genomes]
rs62348505	0.94[EUR][1000 genomes]
rs62348508	0.88[EUR][1000 genomes]
rs62349962	0.94[EUR][1000 genomes]
rs73040691	0.87[EUR][1000 genomes]
rs73040701	0.87[EUR][1000 genomes]
rs7709814	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs981590	0.88[AMR][1000 genomes]
rs981592	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1825549	chr5:16006008-16031799	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16013200-16014400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:16013800-16020400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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