Variant report

Variant	rs10475875
Chromosome Location	chr5:167723323-167723324
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167721263..167723335-chr5:167744275..167746095,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10035471	1.00[AMR][1000 genomes]
rs10037118	1.00[AMR][1000 genomes]
rs10037130	1.00[AMR][1000 genomes]
rs10038320	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10038390	1.00[AMR][1000 genomes]
rs10038391	1.00[AMR][1000 genomes]
rs10040943	1.00[AMR][1000 genomes]
rs10042576	1.00[AMR][1000 genomes]
rs10054916	1.00[AMR][1000 genomes]
rs10067085	1.00[AMR][1000 genomes]
rs1108517	1.00[AMR][1000 genomes]
rs12109088	1.00[AMR][1000 genomes]
rs13359254	1.00[AMR][1000 genomes]
rs1808372	1.00[AMR][1000 genomes]
rs2010076	1.00[AMR][1000 genomes]
rs55689120	1.00[AMR][1000 genomes]
rs73801875	1.00[AMR][1000 genomes]
rs73801876	1.00[AMR][1000 genomes]
rs73802326	1.00[AMR][1000 genomes]
rs73802328	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv949154	chr5:167691208-168323234	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167720400-167724200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:167720400-167726000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr5:167720600-167727000	Weak transcription	GM12878-XiMat	blood
4	chr5:167720800-167724000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:167721200-167724400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:167721600-167724200	Enhancers	Placenta	Placenta
7	chr5:167721800-167724000	Enhancers	HepG2	liver
8	chr5:167722000-167723400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:167722000-167723400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:167722000-167723400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:167722000-167723400	Enhancers	Osteobl	bone
12	chr5:167722000-167724000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:167722000-167724000	Genic enhancers	Fetal Intestine Small	intestine
14	chr5:167722000-167724000	Enhancers	Stomach Mucosa	stomach
15	chr5:167722000-167724200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:167722200-167723400	Enhancers	Fetal Lung	lung
17	chr5:167722200-167723400	Enhancers	NH-A	brain
18	chr5:167722200-167723600	Enhancers	Fetal Intestine Large	intestine
19	chr5:167722400-167723400	Enhancers	Fetal Heart	heart
20	chr5:167722600-167723400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:167722600-167723400	Flanking Active TSS	Fetal Brain Female	brain
22	chr5:167722600-167723600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:167722600-167724200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:167722600-167724400	Enhancers	Brain Hippocampus Middle	brain
25	chr5:167722600-167724400	Enhancers	Gastric	stomach
26	chr5:167722800-167723400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:167722800-167723400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:167722800-167723400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr5:167722800-167723400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr5:167722800-167723400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr5:167722800-167723400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr5:167722800-167723400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr5:167722800-167723400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:167722800-167723600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr5:167722800-167723600	Transcr. at gene 5' and 3'	A549	lung
36	chr5:167722800-167723800	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr5:167722800-167724000	Enhancers	Brain Anterior Caudate	brain
38	chr5:167722800-167724400	Enhancers	H9 Cell Line	embryonic stem cell
39	chr5:167722800-167729200	Weak transcription	Esophagus	oesophagus
40	chr5:167723000-167723800	Weak transcription	Pancreas	Pancrea
41	chr5:167723000-167724000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr5:167723000-167724200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr5:167723000-167724200	Genic enhancers	Hela-S3	cervix
44	chr5:167723000-167726600	Weak transcription	HSMM	muscle
45	chr5:167723000-167727200	Weak transcription	HSMMtube	muscle
46	chr5:167723000-167728800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr5:167723000-167728800	Weak transcription	Adipose Nuclei	Adipose
48	chr5:167723000-167728800	Weak transcription	NHDF-Ad	bronchial
49	chr5:167723000-167729200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr5:167723000-167730400	Weak transcription	Lung	lung

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