Variant report

Variant	rs73802328
Chromosome Location	chr5:167900201-167900202
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167899146..167902614-chr5:167904819..167907650,3	K562	blood:
2	chr5:167894488..167896413-chr5:167898214..167900325,2	K562	blood:

Variant related genes	Relation type
ENSG00000113645	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10035471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10036266	1.00[EUR][1000 genomes]
rs10037118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10037130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10038320	1.00[AMR][1000 genomes]
rs10038390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10038391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10042188	1.00[AMR][1000 genomes]
rs10042576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10044536	1.00[EUR][1000 genomes]
rs10054916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10055507	1.00[AMR][1000 genomes]
rs10056428	1.00[AMR][1000 genomes]
rs10059019	1.00[AMR][1000 genomes]
rs10063775	1.00[AMR][1000 genomes]
rs1006513	1.00[AMR][1000 genomes]
rs10068535	1.00[AMR][1000 genomes]
rs10070122	1.00[AMR][1000 genomes]
rs10075191	1.00[AMR][1000 genomes]
rs10475875	1.00[AMR][1000 genomes]
rs1108517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12109088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13354276	1.00[AMR][1000 genomes]
rs13359254	1.00[AMR][1000 genomes]
rs13361044	1.00[AMR][1000 genomes]
rs13361202	1.00[AMR][1000 genomes]
rs17070328	1.00[AMR][1000 genomes]
rs1808372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2010076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28369637	1.00[AMR][1000 genomes]
rs28450630	1.00[AMR][1000 genomes]
rs28702465	1.00[AMR][1000 genomes]
rs34990715	1.00[EUR][1000 genomes]
rs55689120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55736269	1.00[AMR][1000 genomes]
rs61067865	1.00[AMR][1000 genomes]
rs61456455	1.00[AMR][1000 genomes]
rs6886460	1.00[AMR][1000 genomes]
rs73322435	1.00[EUR][1000 genomes]
rs73390783	1.00[EUR][1000 genomes]
rs73390790	1.00[EUR][1000 genomes]
rs73801875	1.00[AMR][1000 genomes]
rs73801876	1.00[AMR][1000 genomes]
rs73802326	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73802340	1.00[AMR][1000 genomes]
rs73802348	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv949154	chr5:167691208-168323234	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023985	chr5:167756193-168285807	Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv537941	chr5:167756193-168285807	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv3444818	chr5:167770667-167902204	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv970006	chr5:167870237-167924444	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167852200-167900400	Strong transcription	Liver	Liver
2	chr5:167876400-167902200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:167881200-167901800	Strong transcription	Placenta	Placenta
4	chr5:167884800-167901400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:167885000-167903000	Strong transcription	A549	lung
6	chr5:167885200-167900400	Strong transcription	Fetal Intestine Small	intestine
7	chr5:167885200-167902400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:167885600-167900800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:167885800-167912800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:167886000-167901000	Weak transcription	Fetal Kidney	kidney
11	chr5:167887200-167900400	Strong transcription	Gastric	stomach
12	chr5:167887400-167901400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:167892200-167913400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:167892400-167912800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr5:167892600-167901800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:167893000-167904200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr5:167893000-167907600	Weak transcription	Esophagus	oesophagus
18	chr5:167893200-167913000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr5:167893600-167904200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr5:167894000-167912800	Weak transcription	Hela-S3	cervix
21	chr5:167894400-167900800	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr5:167895400-167901400	Weak transcription	Brain Germinal Matrix	brain
23	chr5:167895400-167901400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr5:167895400-167912800	Weak transcription	Brain Anterior Caudate	brain
25	chr5:167896000-167913000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:167897200-167904400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr5:167897200-167908200	Weak transcription	Fetal Intestine Large	intestine
28	chr5:167898400-167900400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:167898400-167900400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:167898400-167900400	Strong transcription	Fetal Brain Female	brain
31	chr5:167898400-167900400	Enhancers	HSMMtube	muscle
32	chr5:167898400-167900400	Enhancers	NHLF	lung
33	chr5:167898400-167900400	Enhancers	Osteobl	bone
34	chr5:167898400-167904200	Weak transcription	Lung	lung
35	chr5:167898600-167900400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:167898800-167900400	Enhancers	HMEC	breast
37	chr5:167899000-167900800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr5:167899000-167902200	Weak transcription	Fetal Stomach	stomach
39	chr5:167899200-167904000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr5:167899200-167908400	Weak transcription	HepG2	liver
41	chr5:167899400-167900400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:167899400-167900400	Enhancers	NH-A	brain
43	chr5:167899600-167902000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr5:167899800-167900400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr5:167899800-167900600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr5:167899800-167901000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr5:167900000-167900400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr5:167900000-167900400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr5:167900000-167900400	Enhancers	NHDF-Ad	bronchial
50	chr5:167900000-167900600	Enhancers	HSMM	muscle

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