Variant report

Variant	rs10476900
Chromosome Location	chr5:148162955-148162956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10063588	0.94[EUR][1000 genomes]
rs10063707	0.94[EUR][1000 genomes]
rs17108726	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869881	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889577	0.94[EUR][1000 genomes]
rs73272585	0.83[EUR][1000 genomes]
rs7730353	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv462481	chr5:148130138-148172689	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv599946	chr5:148130138-148172689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148157200-148165800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:148157200-148170200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:148157200-148170600	Weak transcription	NHDF-Ad	bronchial
4	chr5:148157600-148166200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:148157600-148167600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:148161200-148168000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:148161400-148168600	Weak transcription	Esophagus	oesophagus
8	chr5:148162400-148163200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:148162400-148163200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr5:148162800-148163000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr5:148162800-148163200	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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