Variant report

Variant	rs6869881
Chromosome Location	chr5:148121259-148121260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:148118964..148121513-chr5:148480398..148481961,2	MCF-7	breast:
2	chr5:148120971..148121567-chr5:148414549..148415269,4	K562	blood:
3	chr5:148120504..148121429-chr5:148493947..148495138,4	K562	blood:
4	chr5:148120936..148121446-chr5:148377495..148378235,2	K562	blood:
5	chr5:148120624..148121531-chr5:148336800..148337728,5	MCF-7	breast:
6	chr5:148120560..148121409-chr5:148336986..148337828,3	K562	blood:
7	chr5:148120651..148121456-chr5:148377409..148378267,4	MCF-7	breast:
8	chr5:148120594..148121445-chr5:148414311..148414854,2	MCF-7	breast:

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10063588	1.00[EUR][1000 genomes]
rs10063707	1.00[EUR][1000 genomes]
rs10476900	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889577	0.89[EUR][1000 genomes]
rs73272585	0.89[EUR][1000 genomes]
rs7730353	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148115200-148121400	Enhancers	Adipose Nuclei	Adipose
2	chr5:148118800-148121400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:148119200-148121400	Enhancers	Fetal Heart	heart
4	chr5:148119200-148121600	Enhancers	Liver	Liver
5	chr5:148119600-148121600	Enhancers	Colon Smooth Muscle	Colon
6	chr5:148119600-148121600	Enhancers	Fetal Stomach	stomach
7	chr5:148119600-148126200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:148119600-148126200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:148119600-148126400	Weak transcription	Fetal Lung	lung
10	chr5:148119600-148135000	Weak transcription	Right Atrium	heart
11	chr5:148120800-148121400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:148120800-148121600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:148120800-148121600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:148120800-148121600	Enhancers	Brain Substantia Nigra	brain
15	chr5:148120800-148125600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:148120800-148125800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr5:148121000-148121400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr5:148121000-148121400	Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr5:148121000-148121400	Enhancers	HUVEC	blood vessel
20	chr5:148121000-148121400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr5:148121000-148121400	Flanking Active TSS	Osteobl	bone
22	chr5:148121000-148121600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:148121000-148125800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:148121200-148121800	Enhancers	HSMMtube	muscle
25	chr5:148121200-148125600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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