Variant report

Variant	rs10478193
Chromosome Location	chr5:114180880-114180881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10039240	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10046018	1.00[AMR][1000 genomes]
rs10055699	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10055703	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10058230	1.00[AMR][1000 genomes]
rs10058579	1.00[AMR][1000 genomes]
rs10073650	1.00[AMR][1000 genomes]
rs10478191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478199	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478200	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436171	1.00[AMR][1000 genomes]
rs13436468	1.00[AMR][1000 genomes]
rs17137108	1.00[AMR][1000 genomes]
rs28457595	1.00[AMR][1000 genomes]
rs28481900	1.00[AMR][1000 genomes]
rs28693571	1.00[AMR][1000 genomes]
rs28843378	1.00[AMR][1000 genomes]
rs6860255	1.00[AMR][1000 genomes]
rs6860451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv981027	chr5:114143849-114191806	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114180400-114181000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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