Variant report

Variant	rs10478199
Chromosome Location	chr5:114197503-114197504
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10039240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10046018	1.00[AMR][1000 genomes]
rs10055699	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10055703	1.00[AMR][1000 genomes]
rs10058230	1.00[AMR][1000 genomes]
rs10058579	1.00[AMR][1000 genomes]
rs10073650	1.00[AMR][1000 genomes]
rs10478191	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478193	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436171	1.00[AMR][1000 genomes]
rs13436468	1.00[AMR][1000 genomes]
rs17137108	1.00[AMR][1000 genomes]
rs28457595	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28481900	1.00[AMR][1000 genomes]
rs28693571	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28843378	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860255	1.00[AMR][1000 genomes]
rs6860451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114195200-114200600	Weak transcription	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links