Variant report

Variant	rs10479344
Chromosome Location	chr5:98348380-98348381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98341705..98344564-chr5:98346126..98348724,2	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10038192	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10040066	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10050423	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10076291	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10479345	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10479346	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1093794	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1104262	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11242567	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11949103	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11950452	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11950855	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11960896	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12109067	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12189335	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13179812	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1393210	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1472622	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs161731	0.82[AMR][1000 genomes]
rs161935	0.84[EUR][1000 genomes]
rs161936	0.84[EUR][1000 genomes]
rs162341	0.84[EUR][1000 genomes]
rs172874	0.81[AMR][1000 genomes]
rs2455423	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2927647	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2927648	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2927654	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2937706	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2937708	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2937709	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs325220	0.81[AMR][1000 genomes]
rs326493	0.84[EUR][1000 genomes]
rs34489	0.84[EUR][1000 genomes]
rs34490	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34491	0.84[EUR][1000 genomes]
rs34496	0.84[EUR][1000 genomes]
rs34497	0.84[EUR][1000 genomes]
rs34499	0.82[EUR][1000 genomes]
rs363929	0.84[EUR][1000 genomes]
rs366000	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs366353	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs370529	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs378089	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs380156	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs393697	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs395668	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs398436	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs40075	0.81[AMR][1000 genomes]
rs407562	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs416750	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs422127	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs434039	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs443726	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4448016	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs447044	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs449204	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs451141	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4565239	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs45931	0.81[AMR][1000 genomes]
rs4703049	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4703051	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4703052	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4703340	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs539024	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs559574	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6865618	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6885458	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs709390	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7710032	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7711061	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs819232	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826071	chr5:98312447-98358852	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1827754	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1837772	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1838335	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845131	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv4930	chr5:98318768-98350644	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3420271	chr5:98343152-98349350	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3422141	chr5:98343952-98348650	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3341596	chr5:98344077-98348625	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3346446	chr5:98344352-98348850	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv599093	chr5:98344571-98356733	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv599099	chr5:98345182-98356733	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv599100	chr5:98345182-98357415	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv1794778	chr5:98345182-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv1825119	chr5:98345182-98358852	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv599103	chr5:98345287-98356733	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv599107	chr5:98345400-98356733	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv599113	chr5:98345632-98357415	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10479344	RGMB	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98343600-98354800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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