Variant report

Variant	rs12109067
Chromosome Location	chr5:98374632-98374633
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98369332..98370875-chr5:98373257..98375496,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10037147	0.84[EUR][1000 genomes]
rs10038192	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10040066	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10041261	0.94[ASN][1000 genomes]
rs10050423	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10076291	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10479344	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10479345	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10479346	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10479348	0.92[ASN][1000 genomes]
rs1093794	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1104262	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11242567	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11242574	1.00[ASN][1000 genomes]
rs11745405	1.00[ASN][1000 genomes]
rs11949103	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11950452	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11950855	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11960896	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12189335	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12515042	1.00[ASN][1000 genomes]
rs13179812	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1393210	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1472622	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1604450	1.00[ASN][1000 genomes]
rs161731	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs161935	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs161936	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs162341	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs172874	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1875529	1.00[ASN][1000 genomes]
rs2221268	0.94[ASN][1000 genomes]
rs2455423	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2927647	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2927648	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2927654	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2937706	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2937708	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2937709	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs325220	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs326493	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs327807	0.84[EUR][1000 genomes]
rs34489	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34490	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34491	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34496	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34497	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34499	0.87[EUR][1000 genomes]
rs363929	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs366000	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs366353	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs370529	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs378089	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs380156	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs393697	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs395668	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs398436	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs40075	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs407562	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs416750	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs422127	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs434039	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4343864	0.90[ASN][1000 genomes]
rs443726	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4448016	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs447044	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs449204	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs451141	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4565239	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4583911	1.00[ASN][1000 genomes]
rs45931	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs469018	0.83[EUR][1000 genomes]
rs4703048	0.86[EUR][1000 genomes]
rs4703049	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4703051	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4703052	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4703340	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4703345	0.94[ASN][1000 genomes]
rs539024	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs559574	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6865618	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6878136	0.94[ASN][1000 genomes]
rs6885458	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs709390	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7710032	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7711061	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7712408	0.89[ASN][1000 genomes]
rs7719562	1.00[ASN][1000 genomes]
rs7719649	1.00[ASN][1000 genomes]
rs7723242	0.94[ASN][1000 genomes]
rs819232	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12109067	RGMB	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98372800-98374800	Enhancers	Primary B cells from peripheral blood	blood
2	chr5:98373000-98375000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:98373800-98375000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:98373800-98375000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr5:98374200-98374800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr5:98374200-98375000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr5:98374200-98375200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr5:98374400-98375000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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