Variant report

Variant	rs12515042
Chromosome Location	chr5:98377943-98377944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10041261	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10050804	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10076291	0.92[ASN][1000 genomes]
rs10477857	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10479345	0.92[ASN][1000 genomes]
rs10479346	0.92[ASN][1000 genomes]
rs10479348	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11242567	1.00[ASN][1000 genomes]
rs11242574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745405	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949103	0.92[ASN][1000 genomes]
rs11950452	0.92[ASN][1000 genomes]
rs11950855	0.87[ASN][1000 genomes]
rs11960896	0.92[ASN][1000 genomes]
rs12109067	1.00[ASN][1000 genomes]
rs12189335	0.92[ASN][1000 genomes]
rs13179812	0.94[ASN][1000 genomes]
rs1393210	1.00[ASN][1000 genomes]
rs1604450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs161729	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs161730	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs161732	0.85[AMR][1000 genomes]
rs161943	0.81[AMR][1000 genomes]
rs161947	0.81[AMR][1000 genomes]
rs167798	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1875529	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2221268	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs246251	0.85[AMR][1000 genomes]
rs325195	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs326481	0.87[AMR][1000 genomes]
rs326482	0.87[AMR][1000 genomes]
rs34488	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34498	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs39660	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4343864	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4448016	1.00[ASN][1000 genomes]
rs4583911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703052	0.92[ASN][1000 genomes]
rs4703340	0.92[ASN][1000 genomes]
rs4703345	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6865618	1.00[ASN][1000 genomes]
rs6878136	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6885458	1.00[ASN][1000 genomes]
rs709386	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs709387	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs709388	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs709389	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7449447	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7712408	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7719562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723242	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs819227	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs819230	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs819231	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12515042	RGMB	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98377000-98378000	Enhancers	Primary B cells from peripheral blood	blood

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