Variant report

Variant	rs7449447
Chromosome Location	chr5:98337167-98337168
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:98336536..98338225-chr5:98341064..98343650,2	K562	blood:
2	chr5:98263100..98265682-chr5:98335904..98338137,3	K562	blood:
3	chr5:98334839..98337187-chr5:98340371..98342752,2	K562	blood:

Variant related genes	Relation type
ENSG00000248489	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10041261	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10050804	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10477857	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10479348	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11242574	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11745405	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12515042	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1604450	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs161729	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs161730	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs161732	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs161943	0.82[AMR][1000 genomes]
rs161947	0.81[AMR][1000 genomes]
rs167798	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1875529	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2221268	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs246251	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs325195	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs326481	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs326482	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34488	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34498	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs39660	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4343864	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4583911	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4703345	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6878136	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs709386	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs709387	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs709388	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs709389	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7712408	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7719562	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7719649	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7723242	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs819227	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs819230	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs819231	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826071	chr5:98312447-98358852	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1827754	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1837772	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1838335	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845131	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv4930	chr5:98318768-98350644	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1791809	chr5:98333129-98346305	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv1797550	chr5:98333129-98346514	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv1847033	chr5:98333129-98346514	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7449447	RGMB	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98335400-98337800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:98336200-98337400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:98336400-98337400	Enhancers	HUVEC	blood vessel
4	chr5:98336600-98338000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr5:98336600-98338400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:98336800-98337200	Enhancers	Stomach Mucosa	stomach

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