Variant report

Variant	rs4703345
Chromosome Location	chr5:98352383-98352384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98292901..98295067-chr5:98352005..98354647,2	K562	blood:
2	chr5:98263237..98265287-chr5:98351093..98355344,3	K562	blood:

Variant related genes	Relation type
ENSG00000248489	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10038192	0.81[ASN][1000 genomes]
rs10040066	0.85[ASN][1000 genomes]
rs10041261	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050423	0.83[ASN][1000 genomes]
rs10050804	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10076291	0.97[ASN][1000 genomes]
rs10477857	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10479345	0.97[ASN][1000 genomes]
rs10479346	0.97[ASN][1000 genomes]
rs10479348	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1093794	0.81[ASN][1000 genomes]
rs1104262	0.81[ASN][1000 genomes]
rs11242567	0.94[ASN][1000 genomes]
rs11242574	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11745405	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11949103	0.97[ASN][1000 genomes]
rs11950452	0.97[ASN][1000 genomes]
rs11950855	0.92[ASN][1000 genomes]
rs11960896	0.97[ASN][1000 genomes]
rs12109067	0.94[ASN][1000 genomes]
rs12189335	0.97[ASN][1000 genomes]
rs12515042	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13179812	1.00[ASN][1000 genomes]
rs1393210	0.94[ASN][1000 genomes]
rs1472622	0.85[ASN][1000 genomes]
rs1604450	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs161729	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs161730	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs161731	0.81[ASN][1000 genomes]
rs161732	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs161935	0.81[ASN][1000 genomes]
rs161936	0.81[ASN][1000 genomes]
rs161943	0.80[AMR][1000 genomes]
rs167798	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1875529	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2221268	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455423	0.81[ASN][1000 genomes]
rs246251	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2927648	0.81[ASN][1000 genomes]
rs2927654	0.81[ASN][1000 genomes]
rs2937706	0.81[ASN][1000 genomes]
rs2937708	0.81[ASN][1000 genomes]
rs2937709	0.81[ASN][1000 genomes]
rs325195	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs326481	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs326482	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34488	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34489	0.81[ASN][1000 genomes]
rs34490	0.81[ASN][1000 genomes]
rs34498	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs363929	0.83[ASN][1000 genomes]
rs366000	0.81[ASN][1000 genomes]
rs366353	0.85[ASN][1000 genomes]
rs378089	0.81[ASN][1000 genomes]
rs380156	0.81[ASN][1000 genomes]
rs393697	0.81[ASN][1000 genomes]
rs39660	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs398436	0.81[ASN][1000 genomes]
rs40075	0.81[ASN][1000 genomes]
rs407562	0.81[ASN][1000 genomes]
rs416750	0.85[ASN][1000 genomes]
rs422127	0.81[ASN][1000 genomes]
rs434039	0.81[ASN][1000 genomes]
rs4343864	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs443726	0.81[ASN][1000 genomes]
rs4448016	0.94[ASN][1000 genomes]
rs447044	0.85[ASN][1000 genomes]
rs449204	0.81[ASN][1000 genomes]
rs451141	0.81[ASN][1000 genomes]
rs4565239	0.85[ASN][1000 genomes]
rs4583911	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs45931	0.81[ASN][1000 genomes]
rs4703049	0.85[ASN][1000 genomes]
rs4703051	0.85[ASN][1000 genomes]
rs4703052	0.97[ASN][1000 genomes]
rs4703340	0.97[ASN][1000 genomes]
rs539024	0.85[ASN][1000 genomes]
rs559574	0.81[ASN][1000 genomes]
rs6865618	0.94[ASN][1000 genomes]
rs6878136	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6885458	0.94[ASN][1000 genomes]
rs709386	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs709387	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs709388	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs709389	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs709390	0.85[ASN][1000 genomes]
rs7449447	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7710032	0.85[ASN][1000 genomes]
rs7711061	0.85[ASN][1000 genomes]
rs7712408	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7719562	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7719649	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7723242	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs819227	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs819230	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs819231	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs819232	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826071	chr5:98312447-98358852	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1827754	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1837772	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1838335	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845131	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv599093	chr5:98344571-98356733	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv599099	chr5:98345182-98356733	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv599100	chr5:98345182-98357415	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1794778	chr5:98345182-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1825119	chr5:98345182-98358852	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv599103	chr5:98345287-98356733	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv599107	chr5:98345400-98356733	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv599113	chr5:98345632-98357415	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4703345	RGMB	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98343600-98354800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:98351800-98353600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:98352200-98352800	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links