Variant report

Variant	rs10050804
Chromosome Location	chr5:98350967-98350968
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10041261	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10076291	0.85[ASN][1000 genomes]
rs10477857	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10479345	0.85[ASN][1000 genomes]
rs10479346	0.85[ASN][1000 genomes]
rs10479348	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11242574	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11745405	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11949103	0.85[ASN][1000 genomes]
rs11950452	0.85[ASN][1000 genomes]
rs11950855	0.80[ASN][1000 genomes]
rs11960896	0.85[ASN][1000 genomes]
rs12189335	0.85[ASN][1000 genomes]
rs12515042	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13179812	0.83[ASN][1000 genomes]
rs152034	0.82[AMR][1000 genomes]
rs1604450	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs161729	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs161730	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs161732	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs161744	0.82[AMR][1000 genomes]
rs161745	0.82[AMR][1000 genomes]
rs161746	0.82[AMR][1000 genomes]
rs161943	0.80[AMR][1000 genomes]
rs167798	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1875529	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2221268	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs246251	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs325195	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs326481	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs326482	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34488	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34498	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs39660	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4343864	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4583911	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4703052	0.85[ASN][1000 genomes]
rs4703340	0.85[ASN][1000 genomes]
rs4703345	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6878136	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs709386	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs709387	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs709388	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs709389	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7449447	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7712408	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7719562	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7719649	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7723242	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs819227	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs819230	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs819231	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826071	chr5:98312447-98358852	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1827754	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1837772	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1838335	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845131	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv599093	chr5:98344571-98356733	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv599099	chr5:98345182-98356733	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv599100	chr5:98345182-98357415	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1794778	chr5:98345182-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1825119	chr5:98345182-98358852	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv599103	chr5:98345287-98356733	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv599107	chr5:98345400-98356733	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv599113	chr5:98345632-98357415	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10050804	RGMB	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98343600-98354800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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