Variant report

Variant	rs10479835
Chromosome Location	chr7:3941435-3941436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3931415..3933843-chr7:3939844..3942061,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10242592	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17133810	1.00[EUR][1000 genomes]
rs17133928	1.00[EUR][1000 genomes]
rs55816251	1.00[EUR][1000 genomes]
rs55846059	1.00[EUR][1000 genomes]
rs55869115	1.00[EUR][1000 genomes]
rs56004496	1.00[EUR][1000 genomes]
rs56237255	1.00[EUR][1000 genomes]
rs56246492	1.00[EUR][1000 genomes]
rs56305808	1.00[EUR][1000 genomes]
rs56333541	1.00[EUR][1000 genomes]
rs56898700	1.00[EUR][1000 genomes]
rs57094881	1.00[EUR][1000 genomes]
rs57424663	1.00[EUR][1000 genomes]
rs58327588	1.00[EUR][1000 genomes]
rs58905763	1.00[EUR][1000 genomes]
rs59519297	1.00[EUR][1000 genomes]
rs60985616	1.00[EUR][1000 genomes]
rs61509677	1.00[EUR][1000 genomes]
rs6462311	1.00[EUR][1000 genomes]
rs6462312	1.00[EUR][1000 genomes]
rs6969090	1.00[EUR][1000 genomes]
rs73296620	1.00[EUR][1000 genomes]
rs73672170	1.00[EUR][1000 genomes]
rs73672171	1.00[EUR][1000 genomes]
rs73672172	1.00[EUR][1000 genomes]
rs73672179	1.00[EUR][1000 genomes]
rs73672180	1.00[EUR][1000 genomes]
rs73672181	1.00[EUR][1000 genomes]
rs73672184	1.00[EUR][1000 genomes]
rs73672190	1.00[EUR][1000 genomes]
rs73672193	1.00[EUR][1000 genomes]
rs73672197	1.00[EUR][1000 genomes]
rs73672198	1.00[EUR][1000 genomes]
rs73672199	1.00[EUR][1000 genomes]
rs73672201	1.00[EUR][1000 genomes]
rs73674304	1.00[EUR][1000 genomes]
rs73674305	1.00[EUR][1000 genomes]
rs73674306	1.00[EUR][1000 genomes]
rs73674311	1.00[EUR][1000 genomes]
rs73674313	1.00[EUR][1000 genomes]
rs73674317	1.00[EUR][1000 genomes]
rs73674319	1.00[EUR][1000 genomes]
rs73674325	1.00[EUR][1000 genomes]
rs73674334	1.00[EUR][1000 genomes]
rs73674337	1.00[EUR][1000 genomes]
rs73674338	1.00[EUR][1000 genomes]
rs73674340	1.00[EUR][1000 genomes]
rs73674344	1.00[EUR][1000 genomes]
rs73674346	1.00[EUR][1000 genomes]
rs73674347	1.00[EUR][1000 genomes]
rs73674351	1.00[EUR][1000 genomes]
rs73674354	1.00[EUR][1000 genomes]
rs7793255	1.00[EUR][1000 genomes]
rs7793745	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1019190	chr7:3896634-3943566	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1025497	chr7:3905444-4176032	Enhancers Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv538686	chr7:3905444-4176032	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv433014	chr7:3910039-4054769	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv518377	chr7:3939055-3978342	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1030082	chr7:3941203-3986403	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3901200-3959600	Weak transcription	Pancreas	Pancrea
2	chr7:3906800-3949000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:3936800-3974200	Weak transcription	Aorta	Aorta
4	chr7:3937800-3943400	Weak transcription	Psoas Muscle	Psoas
5	chr7:3939600-3947600	Weak transcription	Brain Substantia Nigra	brain
6	chr7:3940200-3943400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr7:3940600-3953800	Weak transcription	Fetal Brain Male	brain

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