Variant report

Variant	rs73672199
Chromosome Location	chr7:3872315-3872316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3869441..3873485-chr7:3874095..3876939,3	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10085799	1.00[EUR][1000 genomes]
rs10242592	1.00[EUR][1000 genomes]
rs10247866	1.00[EUR][1000 genomes]
rs10479835	1.00[EUR][1000 genomes]
rs17133810	1.00[EUR][1000 genomes]
rs17133928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28439431	1.00[EUR][1000 genomes]
rs55816251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55818819	1.00[EUR][1000 genomes]
rs55846059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55869115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56004496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56237255	1.00[EUR][1000 genomes]
rs56246492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56305808	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56333541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56398165	1.00[AMR][1000 genomes]
rs56898700	1.00[EUR][1000 genomes]
rs57094881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57424663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58035388	1.00[EUR][1000 genomes]
rs58327588	1.00[EUR][1000 genomes]
rs58905763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59519297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60985616	1.00[EUR][1000 genomes]
rs61509677	1.00[EUR][1000 genomes]
rs6462311	1.00[EUR][1000 genomes]
rs6462312	1.00[EUR][1000 genomes]
rs6969090	1.00[EUR][1000 genomes]
rs6979747	1.00[EUR][1000 genomes]
rs73296620	1.00[EUR][1000 genomes]
rs73672155	1.00[EUR][1000 genomes]
rs73672156	1.00[EUR][1000 genomes]
rs73672159	1.00[EUR][1000 genomes]
rs73672160	1.00[EUR][1000 genomes]
rs73672163	1.00[EUR][1000 genomes]
rs73672164	1.00[EUR][1000 genomes]
rs73672165	1.00[EUR][1000 genomes]
rs73672166	1.00[EUR][1000 genomes]
rs73672167	1.00[EUR][1000 genomes]
rs73672168	1.00[EUR][1000 genomes]
rs73672170	1.00[EUR][1000 genomes]
rs73672171	1.00[EUR][1000 genomes]
rs73672172	1.00[EUR][1000 genomes]
rs73672179	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73672180	1.00[EUR][1000 genomes]
rs73672181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73672184	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73672193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73672197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73672198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73672201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674332	1.00[AMR][1000 genomes]
rs73674334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674337	1.00[EUR][1000 genomes]
rs73674338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674339	1.00[AMR][1000 genomes]
rs73674340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674357	1.00[AMR][1000 genomes]
rs73674358	1.00[AMR][1000 genomes]
rs7793255	1.00[EUR][1000 genomes]
rs7793745	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1021443	chr7:3705273-3889334	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1027624	chr7:3808366-3923408	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv538684	chr7:3808366-3923408	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv887336	chr7:3870810-3934909	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3848400-3882000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:3849400-3880600	Weak transcription	Aorta	Aorta
3	chr7:3861000-3886400	Weak transcription	Pancreas	Pancrea
4	chr7:3872200-3872600	Enhancers	Rectal Mucosa Donor 29	rectum

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