Variant report

Variant	rs55818819
Chromosome Location	chr7:3799790-3799791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3793998..3797473-chr7:3798195..3801316,4	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10085799	1.00[EUR][1000 genomes]
rs10247866	1.00[EUR][1000 genomes]
rs17133810	1.00[EUR][1000 genomes]
rs17133928	1.00[EUR][1000 genomes]
rs28439431	1.00[EUR][1000 genomes]
rs55869115	1.00[EUR][1000 genomes]
rs55998900	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56114690	1.00[EUR][1000 genomes]
rs56898700	1.00[EUR][1000 genomes]
rs57094881	1.00[EUR][1000 genomes]
rs57424663	1.00[EUR][1000 genomes]
rs57546275	1.00[EUR][1000 genomes]
rs58035388	1.00[EUR][1000 genomes]
rs58327588	1.00[EUR][1000 genomes]
rs58905763	1.00[EUR][1000 genomes]
rs60985616	1.00[EUR][1000 genomes]
rs61509677	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6462311	1.00[EUR][1000 genomes]
rs6462312	1.00[EUR][1000 genomes]
rs6969090	1.00[EUR][1000 genomes]
rs6979747	1.00[EUR][1000 genomes]
rs73300296	1.00[EUR][1000 genomes]
rs73302261	1.00[EUR][1000 genomes]
rs73672137	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672142	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672145	1.00[EUR][1000 genomes]
rs73672148	1.00[EUR][1000 genomes]
rs73672149	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672150	1.00[EUR][1000 genomes]
rs73672152	1.00[EUR][1000 genomes]
rs73672153	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672155	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672156	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672159	1.00[EUR][1000 genomes]
rs73672160	1.00[EUR][1000 genomes]
rs73672163	1.00[EUR][1000 genomes]
rs73672164	1.00[EUR][1000 genomes]
rs73672165	1.00[EUR][1000 genomes]
rs73672166	1.00[EUR][1000 genomes]
rs73672167	1.00[EUR][1000 genomes]
rs73672168	1.00[EUR][1000 genomes]
rs73672170	1.00[EUR][1000 genomes]
rs73672171	1.00[EUR][1000 genomes]
rs73672172	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672179	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672180	1.00[EUR][1000 genomes]
rs73672181	1.00[EUR][1000 genomes]
rs73672184	1.00[EUR][1000 genomes]
rs73672190	1.00[EUR][1000 genomes]
rs73672193	1.00[EUR][1000 genomes]
rs73672197	1.00[EUR][1000 genomes]
rs73672198	1.00[EUR][1000 genomes]
rs73672199	1.00[EUR][1000 genomes]
rs73672201	1.00[EUR][1000 genomes]
rs73673665	1.00[EUR][1000 genomes]
rs73673666	1.00[EUR][1000 genomes]
rs73673667	1.00[EUR][1000 genomes]
rs73673671	1.00[EUR][1000 genomes]
rs73673672	1.00[EUR][1000 genomes]
rs73673683	1.00[EUR][1000 genomes]
rs73673687	1.00[EUR][1000 genomes]
rs73674304	1.00[EUR][1000 genomes]
rs73674305	1.00[EUR][1000 genomes]
rs73674306	1.00[EUR][1000 genomes]
rs73674311	1.00[EUR][1000 genomes]
rs73674313	1.00[EUR][1000 genomes]
rs73674317	1.00[EUR][1000 genomes]
rs73674319	1.00[EUR][1000 genomes]
rs73674325	1.00[EUR][1000 genomes]
rs7793255	1.00[EUR][1000 genomes]
rs7793745	1.00[EUR][1000 genomes]
rs7804113	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1017868	chr7:3698885-3820159	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1021443	chr7:3705273-3889334	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1019582	chr7:3718061-3814514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv538682	chr7:3718061-3814514	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1022650	chr7:3723035-3847680	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1024704	chr7:3736254-3831859	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1031610	chr7:3744536-3838844	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1031999	chr7:3782751-3847680	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv538683	chr7:3782751-3847680	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2756505	chr7:3789992-3856544	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv605937	chr7:3792038-3836379	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv605938	chr7:3792038-3852261	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1024292	chr7:3792949-3838578	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3773000-3820000	Weak transcription	Pancreas	Pancrea
2	chr7:3782600-3800200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:3792800-3801800	Weak transcription	Gastric	stomach
4	chr7:3794400-3801800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:3794800-3799800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:3795000-3799800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:3795200-3800200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:3795600-3801600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:3795800-3799800	Weak transcription	Fetal Lung	lung
10	chr7:3798400-3800400	Weak transcription	Stomach Mucosa	stomach

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