Variant report

Variant	rs73673666
Chromosome Location	chr7:3681005-3681006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3666241..3668989-chr7:3678664..3681539,2	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10085799	1.00[EUR][1000 genomes]
rs28439431	1.00[EUR][1000 genomes]
rs55818819	1.00[EUR][1000 genomes]
rs55998900	1.00[EUR][1000 genomes]
rs56098725	1.00[EUR][1000 genomes]
rs56114690	1.00[EUR][1000 genomes]
rs57546275	1.00[EUR][1000 genomes]
rs57628119	1.00[EUR][1000 genomes]
rs57785562	1.00[EUR][1000 genomes]
rs57815878	1.00[EUR][1000 genomes]
rs58061781	1.00[EUR][1000 genomes]
rs58504043	1.00[EUR][1000 genomes]
rs59206202	1.00[EUR][1000 genomes]
rs59932157	1.00[EUR][1000 genomes]
rs60080946	1.00[EUR][1000 genomes]
rs60091839	1.00[EUR][1000 genomes]
rs60660116	1.00[EUR][1000 genomes]
rs61378554	1.00[EUR][1000 genomes]
rs6979747	1.00[EUR][1000 genomes]
rs73300296	1.00[EUR][1000 genomes]
rs73302261	1.00[EUR][1000 genomes]
rs73671888	1.00[EUR][1000 genomes]
rs73671891	1.00[EUR][1000 genomes]
rs73672137	1.00[EUR][1000 genomes]
rs73672142	1.00[EUR][1000 genomes]
rs73672145	1.00[EUR][1000 genomes]
rs73672148	1.00[EUR][1000 genomes]
rs73672149	1.00[EUR][1000 genomes]
rs73672150	1.00[EUR][1000 genomes]
rs73672152	1.00[EUR][1000 genomes]
rs73672153	1.00[EUR][1000 genomes]
rs73672155	1.00[EUR][1000 genomes]
rs73672156	1.00[EUR][1000 genomes]
rs73672159	1.00[EUR][1000 genomes]
rs73672160	1.00[EUR][1000 genomes]
rs73672163	1.00[EUR][1000 genomes]
rs73672164	1.00[EUR][1000 genomes]
rs73672165	1.00[EUR][1000 genomes]
rs73672166	1.00[EUR][1000 genomes]
rs73673603	1.00[EUR][1000 genomes]
rs73673604	1.00[EUR][1000 genomes]
rs73673606	1.00[EUR][1000 genomes]
rs73673611	1.00[EUR][1000 genomes]
rs73673621	1.00[EUR][1000 genomes]
rs73673628	1.00[EUR][1000 genomes]
rs73673629	1.00[EUR][1000 genomes]
rs73673630	1.00[EUR][1000 genomes]
rs73673631	1.00[EUR][1000 genomes]
rs73673632	1.00[EUR][1000 genomes]
rs73673635	1.00[EUR][1000 genomes]
rs73673636	1.00[EUR][1000 genomes]
rs73673639	1.00[EUR][1000 genomes]
rs73673640	1.00[EUR][1000 genomes]
rs73673643	1.00[EUR][1000 genomes]
rs73673645	1.00[EUR][1000 genomes]
rs73673646	1.00[EUR][1000 genomes]
rs73673647	1.00[EUR][1000 genomes]
rs73673648	1.00[EUR][1000 genomes]
rs73673649	1.00[EUR][1000 genomes]
rs73673650	1.00[EUR][1000 genomes]
rs73673654	1.00[EUR][1000 genomes]
rs73673655	1.00[EUR][1000 genomes]
rs73673657	1.00[EUR][1000 genomes]
rs73673659	1.00[EUR][1000 genomes]
rs73673662	1.00[EUR][1000 genomes]
rs73673665	1.00[EUR][1000 genomes]
rs73673667	1.00[EUR][1000 genomes]
rs73673671	1.00[EUR][1000 genomes]
rs73673672	1.00[EUR][1000 genomes]
rs73673683	1.00[EUR][1000 genomes]
rs73673687	1.00[EUR][1000 genomes]
rs7804113	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv948390	chr7:3609821-3734421	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1033415	chr7:3616095-3753563	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv538680	chr7:3616095-3753563	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1016930	chr7:3627295-3705057	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv530553	chr7:3629504-3736851	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1016270	chr7:3650882-3753563	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv538681	chr7:3650882-3753563	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3659200-3684400	Weak transcription	Right Ventricle	heart
2	chr7:3670400-3686600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:3671000-3695600	Weak transcription	Fetal Intestine Small	intestine
4	chr7:3674000-3681200	Weak transcription	Aorta	Aorta
5	chr7:3674000-3682600	Weak transcription	Fetal Brain Female	brain
6	chr7:3674600-3684400	Weak transcription	Fetal Lung	lung
7	chr7:3676200-3688600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:3676400-3681200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:3676600-3687800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:3677600-3683600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:3678000-3681200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr7:3679000-3681200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:3679000-3681200	Weak transcription	Pancreas	Pancrea
14	chr7:3679000-3683600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:3679400-3686600	Weak transcription	Adipose Nuclei	Adipose
16	chr7:3679800-3690400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr7:3680200-3681200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:3680800-3683400	Weak transcription	Left Ventricle	heart
19	chr7:3681000-3681200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:3681000-3681200	Active TSS	Spleen	Spleen
21	chr7:3681000-3683600	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links