Variant report

Variant	rs73672148
Chromosome Location	chr7:3735572-3735573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3734945..3735889-chr7:3936899..3937757,3	MCF-7	breast:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10085799	1.00[EUR][1000 genomes]
rs10247866	1.00[EUR][1000 genomes]
rs17133810	1.00[EUR][1000 genomes]
rs28439431	1.00[EUR][1000 genomes]
rs55818819	1.00[EUR][1000 genomes]
rs55998900	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56098725	1.00[EUR][1000 genomes]
rs56114690	1.00[EUR][1000 genomes]
rs56898700	1.00[EUR][1000 genomes]
rs57546275	1.00[EUR][1000 genomes]
rs58035388	1.00[EUR][1000 genomes]
rs60660116	1.00[EUR][1000 genomes]
rs60985616	1.00[EUR][1000 genomes]
rs61378554	1.00[EUR][1000 genomes]
rs61509677	1.00[EUR][1000 genomes]
rs6462311	1.00[EUR][1000 genomes]
rs6462312	1.00[EUR][1000 genomes]
rs6969090	1.00[EUR][1000 genomes]
rs6979747	1.00[EUR][1000 genomes]
rs73300296	1.00[EUR][1000 genomes]
rs73302261	1.00[EUR][1000 genomes]
rs73672137	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672142	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672145	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672149	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672150	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672152	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73672153	1.00[EUR][1000 genomes]
rs73672155	1.00[EUR][1000 genomes]
rs73672156	1.00[EUR][1000 genomes]
rs73672159	1.00[EUR][1000 genomes]
rs73672160	1.00[EUR][1000 genomes]
rs73672163	1.00[EUR][1000 genomes]
rs73672164	1.00[EUR][1000 genomes]
rs73672165	1.00[EUR][1000 genomes]
rs73672166	1.00[EUR][1000 genomes]
rs73672167	1.00[EUR][1000 genomes]
rs73672168	1.00[EUR][1000 genomes]
rs73672170	1.00[EUR][1000 genomes]
rs73672171	1.00[EUR][1000 genomes]
rs73672172	1.00[EUR][1000 genomes]
rs73672179	1.00[EUR][1000 genomes]
rs73672180	1.00[EUR][1000 genomes]
rs73672181	1.00[EUR][1000 genomes]
rs73672184	1.00[EUR][1000 genomes]
rs73673628	1.00[EUR][1000 genomes]
rs73673629	1.00[EUR][1000 genomes]
rs73673630	1.00[EUR][1000 genomes]
rs73673631	1.00[EUR][1000 genomes]
rs73673632	1.00[EUR][1000 genomes]
rs73673635	1.00[EUR][1000 genomes]
rs73673636	1.00[EUR][1000 genomes]
rs73673639	1.00[EUR][1000 genomes]
rs73673640	1.00[EUR][1000 genomes]
rs73673643	1.00[EUR][1000 genomes]
rs73673645	1.00[EUR][1000 genomes]
rs73673646	1.00[EUR][1000 genomes]
rs73673647	1.00[EUR][1000 genomes]
rs73673648	1.00[EUR][1000 genomes]
rs73673649	1.00[EUR][1000 genomes]
rs73673650	1.00[EUR][1000 genomes]
rs73673654	1.00[EUR][1000 genomes]
rs73673655	1.00[EUR][1000 genomes]
rs73673657	1.00[EUR][1000 genomes]
rs73673659	1.00[EUR][1000 genomes]
rs73673662	1.00[EUR][1000 genomes]
rs73673665	1.00[EUR][1000 genomes]
rs73673666	1.00[EUR][1000 genomes]
rs73673667	1.00[EUR][1000 genomes]
rs73673671	1.00[EUR][1000 genomes]
rs73673672	1.00[EUR][1000 genomes]
rs73673683	1.00[EUR][1000 genomes]
rs73673687	1.00[EUR][1000 genomes]
rs7793255	1.00[EUR][1000 genomes]
rs7793745	1.00[EUR][1000 genomes]
rs7804113	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1033415	chr7:3616095-3753563	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv538680	chr7:3616095-3753563	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv530553	chr7:3629504-3736851	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1016270	chr7:3650882-3753563	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538681	chr7:3650882-3753563	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv605934	chr7:3687012-3738147	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1024837	chr7:3693237-3753563	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1017868	chr7:3698885-3820159	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv887335	chr7:3700352-3766819	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1021443	chr7:3705273-3889334	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv605935	chr7:3713194-3799580	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1019582	chr7:3718061-3814514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv538682	chr7:3718061-3814514	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv605936	chr7:3722433-3766819	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1022650	chr7:3723035-3847680	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv12720	chr7:3723272-3737147	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv1797136	chr7:3734421-3736254	Active TSS Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3722200-3738000	Weak transcription	Pancreas	Pancrea
2	chr7:3728800-3735800	Weak transcription	Aorta	Aorta
3	chr7:3731400-3736800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:3735200-3735600	Enhancers	Primary neutrophils fromperipheralblood	blood

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