Variant report

Variant	rs60660116
Chromosome Location	chr7:3646435-3646436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs17133456	1.00[EUR][1000 genomes]
rs17133464	1.00[EUR][1000 genomes]
rs17133467	1.00[EUR][1000 genomes]
rs17133471	1.00[EUR][1000 genomes]
rs17133477	1.00[EUR][1000 genomes]
rs17133479	1.00[EUR][1000 genomes]
rs17133481	1.00[EUR][1000 genomes]
rs55998900	1.00[EUR][1000 genomes]
rs56098725	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56114690	1.00[EUR][1000 genomes]
rs56862729	1.00[EUR][1000 genomes]
rs56938545	1.00[EUR][1000 genomes]
rs57546275	1.00[EUR][1000 genomes]
rs57628119	1.00[EUR][1000 genomes]
rs57785562	1.00[EUR][1000 genomes]
rs57815878	1.00[EUR][1000 genomes]
rs58061781	1.00[EUR][1000 genomes]
rs58504043	1.00[EUR][1000 genomes]
rs58540106	1.00[EUR][1000 genomes]
rs59206202	1.00[EUR][1000 genomes]
rs59932157	1.00[EUR][1000 genomes]
rs60080946	1.00[EUR][1000 genomes]
rs60091839	1.00[EUR][1000 genomes]
rs60207294	1.00[EUR][1000 genomes]
rs61378554	1.00[EUR][1000 genomes]
rs73293539	1.00[EUR][1000 genomes]
rs73300296	1.00[EUR][1000 genomes]
rs73302261	1.00[EUR][1000 genomes]
rs73671852	1.00[EUR][1000 genomes]
rs73671853	1.00[EUR][1000 genomes]
rs73671863	1.00[EUR][1000 genomes]
rs73671864	1.00[EUR][1000 genomes]
rs73671879	1.00[EUR][1000 genomes]
rs73671888	1.00[EUR][1000 genomes]
rs73671891	1.00[EUR][1000 genomes]
rs73672137	1.00[EUR][1000 genomes]
rs73672142	1.00[EUR][1000 genomes]
rs73672145	1.00[EUR][1000 genomes]
rs73672148	1.00[EUR][1000 genomes]
rs73672149	1.00[EUR][1000 genomes]
rs73672150	1.00[EUR][1000 genomes]
rs73672152	1.00[EUR][1000 genomes]
rs73672153	1.00[EUR][1000 genomes]
rs73672155	1.00[EUR][1000 genomes]
rs73673603	1.00[EUR][1000 genomes]
rs73673604	1.00[EUR][1000 genomes]
rs73673606	1.00[EUR][1000 genomes]
rs73673611	1.00[EUR][1000 genomes]
rs73673621	1.00[EUR][1000 genomes]
rs73673628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73673629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73673630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73673631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73673632	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73673635	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73673636	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73673639	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73673640	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73673643	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73673645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73673646	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73673647	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73673648	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73673649	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73673650	1.00[EUR][1000 genomes]
rs73673654	1.00[EUR][1000 genomes]
rs73673655	1.00[EUR][1000 genomes]
rs73673657	1.00[EUR][1000 genomes]
rs73673659	1.00[EUR][1000 genomes]
rs73673662	1.00[EUR][1000 genomes]
rs73673665	1.00[EUR][1000 genomes]
rs73673666	1.00[EUR][1000 genomes]
rs73673667	1.00[EUR][1000 genomes]
rs73673671	1.00[EUR][1000 genomes]
rs73673672	1.00[EUR][1000 genomes]
rs73673683	1.00[EUR][1000 genomes]
rs73673687	1.00[EUR][1000 genomes]
rs7794298	1.00[EUR][1000 genomes]
rs7804113	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1792280	chr7:3592290-3668229	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv948390	chr7:3609821-3734421	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1033415	chr7:3616095-3753563	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538680	chr7:3616095-3753563	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1016930	chr7:3627295-3705057	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv530553	chr7:3629504-3736851	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3636400-3655800	Weak transcription	Aorta	Aorta
2	chr7:3644600-3646600	Enhancers	HUVEC	blood vessel
3	chr7:3644800-3647400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:3645200-3660400	Weak transcription	HepG2	liver
5	chr7:3646400-3649400	Weak transcription	Pancreas	Pancrea
6	chr7:3646400-3657200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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