Variant report

Variant	rs10481502
Chromosome Location	chr9:14396847-14396848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10961488	1.00[EUR][1000 genomes]
rs12338474	1.00[EUR][1000 genomes]
rs12345851	1.00[EUR][1000 genomes]
rs16931636	1.00[EUR][1000 genomes]
rs16931709	1.00[EUR][1000 genomes]
rs1819196	1.00[EUR][1000 genomes]
rs28821534	1.00[EUR][1000 genomes]
rs4740568	1.00[EUR][1000 genomes]
rs521145	1.00[EUR][1000 genomes]
rs57102067	1.00[EUR][1000 genomes]
rs59538849	1.00[EUR][1000 genomes]
rs7036373	1.00[EUR][1000 genomes]
rs7036460	1.00[EUR][1000 genomes]
rs73419663	1.00[EUR][1000 genomes]
rs73641908	1.00[EUR][1000 genomes]
rs73641924	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892600	chr9:14370172-14469146	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv892601	chr9:14380528-14405555	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14386400-14418400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:14392000-14400400	Weak transcription	Aorta	Aorta
3	chr9:14394000-14400200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:14395800-14397000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:14395800-14398400	Weak transcription	Brain Angular Gyrus	brain
6	chr9:14396200-14400400	Weak transcription	HSMMtube	muscle
7	chr9:14396400-14397000	Enhancers	Psoas Muscle	Psoas
8	chr9:14396400-14397000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr9:14396400-14397400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr9:14396400-14397800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:14396400-14398600	Enhancers	Brain Anterior Caudate	brain
12	chr9:14396400-14398600	Weak transcription	Fetal Lung	lung
13	chr9:14396600-14397000	Enhancers	K562	blood
14	chr9:14396600-14397400	Enhancers	Brain Germinal Matrix	brain
15	chr9:14396600-14397400	Enhancers	Fetal Brain Female	brain
16	chr9:14396600-14398600	Enhancers	Brain Hippocampus Middle	brain
17	chr9:14396600-14400000	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:14396600-14400200	Weak transcription	Fetal Heart	heart
19	chr9:14396600-14400400	Weak transcription	Ovary	ovary
20	chr9:14396600-14401800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:14396800-14398400	Enhancers	Brain Substantia Nigra	brain
22	chr9:14396800-14400000	Enhancers	Brain Cingulate Gyrus	brain
23	chr9:14396800-14400200	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links