Variant report

Variant	rs10961488
Chromosome Location	chr9:14367765-14367766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10481502	1.00[EUR][1000 genomes]
rs12338474	1.00[EUR][1000 genomes]
rs12345851	1.00[EUR][1000 genomes]
rs16931636	1.00[EUR][1000 genomes]
rs16931709	1.00[EUR][1000 genomes]
rs1819196	1.00[EUR][1000 genomes]
rs28821534	1.00[EUR][1000 genomes]
rs4740568	1.00[EUR][1000 genomes]
rs521145	1.00[EUR][1000 genomes]
rs57102067	1.00[EUR][1000 genomes]
rs59538849	1.00[EUR][1000 genomes]
rs7036373	1.00[EUR][1000 genomes]
rs7036460	1.00[EUR][1000 genomes]
rs73419663	1.00[EUR][1000 genomes]
rs73641908	1.00[EUR][1000 genomes]
rs73641924	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14353600-14371800	Weak transcription	Left Ventricle	heart
2	chr9:14357200-14372600	Weak transcription	Fetal Heart	heart
3	chr9:14362200-14372600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:14366200-14371200	Weak transcription	HUVEC	blood vessel
5	chr9:14366200-14371800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:14366200-14372600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:14366200-14391600	Weak transcription	Aorta	Aorta
8	chr9:14366400-14371800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:14366400-14372000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:14366600-14371600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:14366600-14371800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:14367000-14371800	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:14367000-14371800	Weak transcription	NHLF	lung
14	chr9:14367000-14372000	Weak transcription	Fetal Stomach	stomach
15	chr9:14367000-14372600	Weak transcription	Adipose Nuclei	Adipose
16	chr9:14367200-14372200	Weak transcription	Colon Smooth Muscle	Colon
17	chr9:14367400-14371800	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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