Variant report

Variant	rs10482116
Chromosome Location	chrX:74297266-74297267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs5981315	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs5981318	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs5981319	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs5981759	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs5981781	1.00[YRI][hapmap]
rs5981800	1.00[YRI][hapmap]
rs6647083	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs6647614	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs6655627	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv531128	chrX:74232814-74416887	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74265800-74316600	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:74266000-74303200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chrX:74266200-74304800	Weak transcription	GM12878-XiMat	blood
4	chrX:74268000-74298000	Weak transcription	A549	lung
5	chrX:74268000-74302400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chrX:74270400-74317200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chrX:74275800-74297600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chrX:74286600-74306600	Weak transcription	Small Intestine	intestine
9	chrX:74288800-74306400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chrX:74289800-74299000	Weak transcription	Liver	Liver
11	chrX:74290000-74297400	Weak transcription	Hela-S3	cervix
12	chrX:74293800-74297400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chrX:74294800-74298200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chrX:74295200-74297600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chrX:74295200-74298600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chrX:74295200-74300200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chrX:74295200-74306800	Weak transcription	Dnd41	blood
18	chrX:74295200-74308000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chrX:74295200-74333800	Weak transcription	Fetal Intestine Large	intestine
20	chrX:74295400-74327200	Weak transcription	Duodenum Mucosa	Duodenum
21	chrX:74295400-74333000	Weak transcription	Primary B cells from peripheral blood	blood
22	chrX:74295800-74302400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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