Variant report

Variant	rs6647083
Chromosome Location	chrX:74271140-74271141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10482116	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs5981315	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs5981318	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs5981319	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs5981759	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs6647614	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6655627	1.00[MEX][hapmap];1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv531128	chrX:74232814-74416887	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74263800-74286400	Weak transcription	Psoas Muscle	Psoas
2	chrX:74265400-74295400	Weak transcription	Fetal Heart	heart
3	chrX:74265600-74286800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chrX:74265600-74291400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chrX:74265600-74294400	Weak transcription	Brain Substantia Nigra	brain
6	chrX:74265600-74296000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chrX:74265800-74287200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chrX:74265800-74288800	Weak transcription	Left Ventricle	heart
9	chrX:74265800-74294400	Weak transcription	Primary T cells from cord blood	blood
10	chrX:74265800-74316600	Weak transcription	Primary hematopoietic stem cells	blood
11	chrX:74266000-74291800	Weak transcription	Primary B cells from cord blood	blood
12	chrX:74266000-74303200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chrX:74266200-74304800	Weak transcription	GM12878-XiMat	blood
14	chrX:74266400-74272800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chrX:74266400-74274800	Weak transcription	Right Ventricle	heart
16	chrX:74266600-74277400	Weak transcription	Dnd41	blood
17	chrX:74266600-74295000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chrX:74266800-74288600	Weak transcription	Duodenum Mucosa	Duodenum
19	chrX:74266800-74296600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chrX:74267200-74281600	Weak transcription	Fetal Lung	lung
21	chrX:74267200-74291200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chrX:74267200-74296200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chrX:74267400-74288800	Weak transcription	Fetal Intestine Large	intestine
24	chrX:74267600-74272600	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chrX:74267600-74289000	Weak transcription	Fetal Brain Female	brain
26	chrX:74267800-74274600	Weak transcription	Aorta	Aorta
27	chrX:74268000-74281600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chrX:74268000-74294400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chrX:74268000-74298000	Weak transcription	A549	lung
30	chrX:74268000-74302400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chrX:74268200-74283200	Weak transcription	Pancreas	Pancrea
32	chrX:74268400-74277600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chrX:74268400-74278600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chrX:74268400-74287600	Weak transcription	Liver	Liver
35	chrX:74268600-74291200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chrX:74269400-74272400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chrX:74270000-74291800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chrX:74270200-74281400	Weak transcription	Brain Hippocampus Middle	brain
39	chrX:74270400-74317200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chrX:74270800-74271200	Enhancers	Hela-S3	cervix
41	chrX:74271000-74288800	Weak transcription	Stomach Smooth Muscle	stomach
42	chrX:74271000-74290800	Weak transcription	Fetal Intestine Small	intestine

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