Variant report

Variant	rs10482700
Chromosome Location	chr5:142665812-142665813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:142664010..142666464-chr5:142736050..142738721,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10076665	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10482605	0.83[AMR][1000 genomes]
rs10482633	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10482642	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10482689	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10515521	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11740747	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11740792	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1438731	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17287758	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17339831	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4128428	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6198	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72801052	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72801070	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72801079	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72801081	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72801083	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72801086	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72801088	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825941	chr5:142568715-142728031	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv33748	chr5:142638267-142699595	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv5041	chr5:142653189-142697896	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10482700	NR3C1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142646600-142672400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr5:142650000-142674000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:142650600-142677200	Weak transcription	Aorta	Aorta
4	chr5:142652200-142669800	Weak transcription	Left Ventricle	heart
5	chr5:142653000-142671200	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:142653200-142674800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:142654600-142666600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:142655000-142669800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr5:142655000-142671600	Weak transcription	K562	blood
10	chr5:142655200-142674000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:142655200-142674200	Weak transcription	Brain Angular Gyrus	brain
12	chr5:142655400-142672600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr5:142655800-142669800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:142655800-142670200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:142655800-142671800	Weak transcription	Psoas Muscle	Psoas
16	chr5:142655800-142677200	Weak transcription	Spleen	Spleen
17	chr5:142655800-142699200	Strong transcription	Dnd41	blood
18	chr5:142656000-142677400	Weak transcription	Gastric	stomach
19	chr5:142656600-142671600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr5:142656600-142677000	Weak transcription	Lung	lung
21	chr5:142657000-142674000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr5:142657800-142667800	Weak transcription	Fetal Stomach	stomach
23	chr5:142657800-142671800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr5:142657800-142695400	Weak transcription	Pancreas	Pancrea
25	chr5:142658000-142679000	Weak transcription	Colonic Mucosa	Colon
26	chr5:142658200-142671400	Weak transcription	Colon Smooth Muscle	Colon
27	chr5:142658200-142694800	Weak transcription	Right Ventricle	heart
28	chr5:142658400-142714800	Weak transcription	Esophagus	oesophagus
29	chr5:142658800-142677400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr5:142659400-142677200	Weak transcription	HSMMtube	muscle
31	chr5:142659600-142674600	Weak transcription	HepG2	liver
32	chr5:142659600-142677400	Weak transcription	Ovary	ovary
33	chr5:142659800-142679400	Weak transcription	Small Intestine	intestine
34	chr5:142659800-142692600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr5:142660200-142670400	Weak transcription	Brain Anterior Caudate	brain
36	chr5:142660800-142669800	Weak transcription	Thymus	Thymus
37	chr5:142661600-142677200	Weak transcription	HUVEC	blood vessel
38	chr5:142661800-142671200	Weak transcription	Hela-S3	cervix
39	chr5:142662400-142673000	Weak transcription	NH-A	brain
40	chr5:142662600-142669800	Weak transcription	Primary T cells from cord blood	blood
41	chr5:142662600-142672800	Weak transcription	Fetal Kidney	kidney
42	chr5:142662800-142667800	Weak transcription	Fetal Intestine Small	intestine
43	chr5:142663400-142666400	ZNF genes & repeats	GM12878-XiMat	blood
44	chr5:142663800-142670400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr5:142663800-142671200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr5:142663800-142671200	Weak transcription	NHLF	lung
47	chr5:142664000-142666200	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr5:142664000-142667400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr5:142664000-142667600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr5:142664000-142668000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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