Variant report

Variant	rs10483365
Chromosome Location	chr14:31153323-31153324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:31152319-31153519	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
UBE2CP1	TF binding region

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10131312	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10139188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10140887	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10143215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10148858	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10149721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11622971	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11628947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1548257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17096955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17097068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097075	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17097077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17097127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17348844	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17364127	0.94[EUR][1000 genomes]
rs2124159	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2273517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs229140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs229142	0.96[ASN][1000 genomes]
rs229165	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229204	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs229230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs229238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs229239	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs229242	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs229256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2301547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs230342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs230344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs230345	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs230349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs230350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs230354	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs230357	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs230365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28435745	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs28662978	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28679478	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34346578	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs392101	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs455614	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981073	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4981075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4981760	0.84[ASN][1000 genomes]
rs4981763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4981768	0.88[ASN][1000 genomes]
rs4981769	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57057168	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60495706	0.94[EUR][1000 genomes]
rs6571360	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7140980	0.94[EUR][1000 genomes]
rs7147237	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7152647	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7156485	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7158970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7160985	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7161321	0.94[EUR][1000 genomes]
rs8004335	0.84[ASN][1000 genomes]
rs8011610	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8012506	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8014225	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs880979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	esv3372805	chr14:31150454-31154300	Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv564172	chr14:31151449-31153323	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv3408766	chr14:31153051-31160649	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31093800-31159600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:31096000-31167400	Weak transcription	Gastric	stomach
3	chr14:31113800-31205400	Weak transcription	Fetal Brain Male	brain
4	chr14:31115000-31167600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:31115200-31159600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:31121600-31159600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:31122400-31159600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:31122800-31205200	Weak transcription	Brain Angular Gyrus	brain
9	chr14:31123000-31212000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:31123400-31216400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr14:31123600-31159800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr14:31123600-31165400	Weak transcription	Colonic Mucosa	Colon
13	chr14:31124400-31160200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr14:31124400-31171400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr14:31125000-31159600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:31125200-31170000	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:31125400-31160000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr14:31128200-31164600	Weak transcription	Brain Anterior Caudate	brain
19	chr14:31128200-31165600	Weak transcription	HSMMtube	muscle
20	chr14:31132400-31160400	Weak transcription	Hela-S3	cervix
21	chr14:31133200-31160600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr14:31133800-31154000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:31133800-31159600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:31133800-31159600	Weak transcription	Esophagus	oesophagus
25	chr14:31133800-31197400	Weak transcription	Aorta	Aorta
26	chr14:31134200-31167000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr14:31138400-31153600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr14:31138800-31153400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:31139000-31153600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr14:31139000-31153800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:31139400-31153800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr14:31139400-31153800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr14:31139600-31153800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:31139800-31153600	Strong transcription	Liver	Liver
35	chr14:31141600-31167400	Weak transcription	Psoas Muscle	Psoas
36	chr14:31142200-31160200	Weak transcription	Fetal Heart	heart
37	chr14:31142200-31164800	Weak transcription	Fetal Intestine Small	intestine
38	chr14:31143400-31159800	Weak transcription	HUVEC	blood vessel
39	chr14:31145200-31160200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr14:31146200-31159600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr14:31146600-31165600	Weak transcription	Brain Germinal Matrix	brain
42	chr14:31146600-31165600	Weak transcription	Fetal Thymus	thymus
43	chr14:31147400-31153800	Strong transcription	HSMM	muscle
44	chr14:31147800-31160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr14:31148400-31153400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr14:31148600-31159600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr14:31148800-31153400	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr14:31149200-31160000	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr14:31149400-31164000	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr14:31149800-31153600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links