Variant report

Variant	rs8004335
Chromosome Location	chr14:31010617-31010618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10131312	0.92[ASN][1000 genomes]
rs10139188	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs10140887	0.82[ASN][1000 genomes]
rs10143215	1.00[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs10143362	0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs10148858	0.88[ASN][1000 genomes]
rs10149721	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap]
rs10483365	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs11622971	0.84[ASN][1000 genomes]
rs11624441	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs11628947	1.00[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap]
rs17096955	1.00[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs17097068	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs17097075	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs17097077	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs17097124	0.83[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap]
rs17348844	0.88[ASN][1000 genomes]
rs2124159	0.84[ASN][1000 genomes]
rs2273516	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs229140	0.92[JPT][hapmap];0.85[MEX][hapmap];0.88[ASN][1000 genomes]
rs229142	0.88[ASN][1000 genomes]
rs229165	0.84[ASN][1000 genomes]
rs229203	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs229204	0.84[ASN][1000 genomes]
rs229229	1.00[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs229230	0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs229238	1.00[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs229239	0.88[ASN][1000 genomes]
rs229242	0.88[ASN][1000 genomes]
rs229256	1.00[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.92[ASN][1000 genomes]
rs2301547	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap]
rs230342	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs230344	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs230345	1.00[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs230349	1.00[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs230350	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs230354	0.82[ASN][1000 genomes]
rs230357	0.84[ASN][1000 genomes]
rs230365	1.00[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs28662978	0.84[ASN][1000 genomes]
rs28679478	0.88[ASN][1000 genomes]
rs392101	0.84[ASN][1000 genomes]
rs455614	0.84[ASN][1000 genomes]
rs4981073	0.92[ASN][1000 genomes]
rs4981075	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs4981760	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981763	0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs4981768	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57057168	0.84[ASN][1000 genomes]
rs7147237	0.92[ASN][1000 genomes]
rs7152647	0.92[ASN][1000 genomes]
rs7158970	1.00[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.92[ASN][1000 genomes]
rs7160985	0.92[ASN][1000 genomes]
rs8014225	0.84[ASN][1000 genomes]
rs880979	0.92[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31002400-31020800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links