Variant report

Variant	rs10483802
Chromosome Location	chr14:68117421-68117422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68116450..68118216-chr14:68179269..68182045,2	MCF-7	breast:
2	chr14:68086481..68089265-chr14:68117411..68120883,3	K562	blood:

Variant related genes	Relation type
ENSG00000081181	Chromatin interaction
ENSG00000258618	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10136206	0.80[JPT][hapmap]
rs12100925	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12431676	0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12432546	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12434923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12435352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12435531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12435927	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436474	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs12437263	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12587408	0.84[ASN][1000 genomes]
rs12590038	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12590620	0.80[ASN][1000 genomes]
rs15493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17249444	0.82[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs17249563	0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17836863	0.88[ASN][1000 genomes]
rs1804799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2009590	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3759768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56981676	0.80[ASN][1000 genomes]
rs59421018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60851053	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs718213	1.00[CEU][hapmap]
rs742868	0.81[YRI][hapmap]
rs8010798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8013234	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs910315	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902068	chr14:68083133-68204876	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68088800-68123000	Weak transcription	Fetal Brain Male	brain
2	chr14:68109000-68130000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:68109000-68133200	Weak transcription	Stomach Mucosa	stomach
4	chr14:68109800-68124400	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:68109800-68126000	Strong transcription	Fetal Brain Female	brain
6	chr14:68111000-68126800	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr14:68111000-68135200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:68111400-68119000	Strong transcription	K562	blood
9	chr14:68111800-68126000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:68112000-68124200	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr14:68112000-68124400	Strong transcription	Brain Germinal Matrix	brain
12	chr14:68112000-68129400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:68112000-68129800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr14:68112200-68120400	Strong transcription	Adipose Nuclei	Adipose
15	chr14:68112200-68121200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:68112200-68125000	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr14:68112200-68126800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr14:68112200-68126800	Strong transcription	Placenta	Placenta
19	chr14:68112200-68127000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:68112200-68127000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:68112200-68127200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr14:68112200-68127200	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr14:68112200-68128000	Strong transcription	Dnd41	blood
24	chr14:68112200-68128200	Strong transcription	Primary T cells from cord blood	blood
25	chr14:68112200-68128200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr14:68112200-68129200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr14:68112400-68121400	Strong transcription	HepG2	liver
28	chr14:68112400-68124000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr14:68112400-68124400	Strong transcription	HSMM	muscle
30	chr14:68112400-68126600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:68112400-68126800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr14:68112400-68126800	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr14:68112400-68127000	Strong transcription	Brain Anterior Caudate	brain
34	chr14:68112400-68127000	Strong transcription	Duodenum Mucosa	Duodenum
35	chr14:68112400-68127800	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr14:68112400-68127800	Strong transcription	A549	lung
37	chr14:68112400-68128000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr14:68112400-68128400	Strong transcription	Liver	Liver
39	chr14:68112400-68129400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr14:68112400-68129800	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr14:68112400-68130000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:68112400-68130000	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr14:68112600-68121000	Strong transcription	Ovary	ovary
44	chr14:68112600-68122000	Weak transcription	Right Atrium	heart
45	chr14:68112800-68119200	Strong transcription	HSMMtube	muscle
46	chr14:68112800-68124400	Strong transcription	Primary B cells from cord blood	blood
47	chr14:68112800-68126600	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr14:68112800-68128200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr14:68112800-68128200	Strong transcription	Left Ventricle	heart
50	chr14:68113000-68126800	Strong transcription	Brain Substantia Nigra	brain

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