Variant report

Variant	rs60851053
Chromosome Location	chr14:68134432-68134433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68085072..68086044-chr14:68133285..68134461,6	MCF-7	breast:
2	chr14:67894301..67896561-chr14:68133942..68135577,2	K562	blood:
3	chr14:68132675..68135592-chr14:68137064..68139756,3	K562	blood:
4	chr14:68050701..68051690-chr14:68133716..68134530,5	MCF-7	breast:
5	chr14:68050444..68051446-chr14:68133190..68134648,8	K562	blood:
6	chr14:68133955..68137188-chr14:68149480..68152660,3	MCF-7	breast:
7	chr14:68132783..68137458-chr14:68138173..68142358,7	MCF-7	breast:
8	chr14:68132291..68135760-chr14:68139732..68142533,5	K562	blood:
9	chr14:68085058..68086009-chr14:68133588..68134559,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000100568	Chromatin interaction
ENSG00000054690	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10483802	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12100925	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12431676	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12432546	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12434923	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12435352	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12435531	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12435927	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12436474	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12437263	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12587408	0.81[ASN][1000 genomes]
rs12590038	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs15493	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17249563	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17836863	0.85[ASN][1000 genomes]
rs1804799	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2009590	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3759768	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59421018	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8010798	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8013234	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs910315	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902068	chr14:68083133-68204876	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68111000-68135200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:68115600-68135200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:68117000-68139400	Weak transcription	Psoas Muscle	Psoas
4	chr14:68119400-68140400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:68120800-68135400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:68123800-68139400	Weak transcription	Fetal Brain Male	brain
7	chr14:68124000-68136400	Weak transcription	Pancreas	Pancrea
8	chr14:68124000-68139600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:68124000-68140200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr14:68124000-68140200	Weak transcription	Right Ventricle	heart
11	chr14:68124200-68139400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:68124400-68135400	Weak transcription	Brain Germinal Matrix	brain
13	chr14:68124400-68136600	Weak transcription	Gastric	stomach
14	chr14:68124400-68138000	Weak transcription	Ovary	ovary
15	chr14:68124400-68139400	Weak transcription	Aorta	Aorta
16	chr14:68124400-68139400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr14:68124400-68139400	Weak transcription	Spleen	Spleen
18	chr14:68124400-68139600	Weak transcription	Colonic Mucosa	Colon
19	chr14:68124400-68140400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:68124400-68140800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:68124800-68138400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:68124800-68139200	Weak transcription	Lung	lung
23	chr14:68125000-68139600	Weak transcription	HUVEC	blood vessel
24	chr14:68125800-68138400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:68125800-68140200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr14:68126000-68139400	Weak transcription	Fetal Brain Female	brain
27	chr14:68126600-68139400	Weak transcription	Fetal Lung	lung
28	chr14:68126600-68139400	Weak transcription	Hela-S3	cervix
29	chr14:68126600-68140000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr14:68126800-68135200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:68126800-68135200	Weak transcription	Brain Substantia Nigra	brain
32	chr14:68126800-68135400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr14:68126800-68139600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr14:68126800-68140400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr14:68127000-68138600	Weak transcription	HepG2	liver
36	chr14:68127000-68139400	Weak transcription	NH-A	brain
37	chr14:68127200-68139400	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr14:68127200-68139400	Weak transcription	HSMMtube	muscle
39	chr14:68127400-68139600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:68127600-68138400	Weak transcription	Esophagus	oesophagus
41	chr14:68127800-68139400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr14:68127800-68140200	Weak transcription	A549	lung
43	chr14:68128000-68135400	Weak transcription	Fetal Intestine Large	intestine
44	chr14:68128200-68138800	Weak transcription	Left Ventricle	heart
45	chr14:68128600-68140000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr14:68128800-68139400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr14:68129400-68139400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr14:68129400-68139400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr14:68129600-68139800	Weak transcription	Placenta	Placenta
50	chr14:68130000-68139400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links