Variant report

Variant	rs10484302
Chromosome Location	chr6:117739959-117739960
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117732882..117736812-chr6:117738044..117741372,3	K562	blood:
2	chr6:117738757..117741446-chr6:117744839..117746774,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs12332810	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13194436	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13196657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197031	0.92[ASN][1000 genomes]
rs13199989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13202720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13206903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13211770	0.84[ASN][1000 genomes]
rs13212301	0.92[ASN][1000 genomes]
rs13212382	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13216409	0.80[CEU][hapmap]
rs1358850	0.84[ASN][1000 genomes]
rs17079150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079201	1.00[JPT][hapmap]
rs17079205	1.00[JPT][hapmap]
rs17090953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17165	1.00[JPT][hapmap]
rs1853149	0.92[ASN][1000 genomes]
rs2243375	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2243377	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2243380	0.88[CEU][hapmap]
rs2273603	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34059111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34231660	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34258179	0.80[AMR][1000 genomes]
rs34280338	0.80[AMR][1000 genomes]
rs34900812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34959842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35476086	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35562167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35837924	0.84[EUR][1000 genomes]
rs35874725	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35917072	0.82[EUR][1000 genomes]
rs35921544	0.92[ASN][1000 genomes]
rs36111427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36122926	0.92[ASN][1000 genomes]
rs3777975	0.80[CEU][hapmap]
rs3798391	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3798392	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67157504	0.84[ASN][1000 genomes]
rs71554882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71570849	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71570850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71570852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71570854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72969418	0.92[ASN][1000 genomes]
rs9372479	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9374654	0.80[CEU][hapmap]
rs9398458	0.80[CEU][hapmap]
rs9401005	0.80[CEU][hapmap]
rs9481709	0.92[ASN][1000 genomes]
rs9489153	0.92[ASN][1000 genomes]
rs9489162	0.92[ASN][1000 genomes]
rs9489163	0.92[ASN][1000 genomes]
rs9489165	0.92[ASN][1000 genomes]
rs9489188	1.00[JPT][hapmap]
rs9489189	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv2763593	chr6:117727550-117741495	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1032651	chr6:117727550-117741495	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1025551	chr6:117730592-117741495	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117736600-117744400	Weak transcription	HSMM	muscle
2	chr6:117739000-117740000	Enhancers	Fetal Intestine Large	intestine
3	chr6:117739400-117740600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr6:117739400-117745000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:117739600-117740000	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links