Variant report

Variant	rs17079205
Chromosome Location	chr6:117766021-117766022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:117765560-117766148	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr6:117765628-117766222	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr6:117765687-117766175	Hela-S3	cervix:	n/a	chr6:117765981-117765992 chr6:117765804-117765817
4	EP300	chr6:117765880-117766113	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr6:117765578-117766136	MCF10A-Er-Src	breast:	n/a	n/a
6	CEBPB	chr6:117765681-117766167	IMR90	lung:	n/a	chr6:117765981-117765992 chr6:117765804-117765817
7	EBF1	chr6:117766001-117766273	GM12878	blood:	n/a	chr6:117766114-117766123 chr6:117766112-117766125 chr6:117766114-117766124 chr6:117766113-117766124
8	E2F4	chr6:117765440-117766040	MCF10A-Er-Src	breast:	n/a	n/a
9	POLR2A	chr6:117765645-117766228	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr6:117765736-117766249	MCF10A-Er-Src	breast:	n/a	n/a
11	STAT3	chr6:117765659-117766240	MCF10A-Er-Src	breast:	n/a	n/a
12	CEBPB	chr6:117765806-117766124	A549	lung:	n/a	chr6:117765981-117765992
13	STAT3	chr6:117765650-117766216	MCF10A-Er-Src	breast:	n/a	n/a
14	FOS	chr6:117765756-117766135	MCF10A-Er-Src	breast:	n/a	n/a
15	FOS	chr6:117765662-117766191	MCF10A-Er-Src	breast:	n/a	n/a
16	FOS	chr6:117765725-117766112	MCF10A-Er-Src	breast:	n/a	n/a
17	MYC	chr6:117765595-117766092	MCF10A-Er-Src	breast:	n/a	n/a
18	CEBPB	chr6:117765682-117766099	HepG2	liver:	n/a	chr6:117765981-117765992 chr6:117765804-117765817
19	FOS	chr6:117765716-117766122	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117764099..117766879-chr6:117995038..117997863,2	MCF-7	breast:
2	chr6:117763172..117766100-chr6:117768265..117771221,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221434	TF binding region
ENSG00000153989	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10484302	1.00[JPT][hapmap]
rs1123836	0.91[EUR][1000 genomes]
rs12332810	1.00[JPT][hapmap]
rs13205893	1.00[JPT][hapmap]
rs13206903	1.00[JPT][hapmap]
rs1321808	0.91[EUR][1000 genomes]
rs1321809	0.91[EUR][1000 genomes]
rs1321810	0.91[EUR][1000 genomes]
rs1321811	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs17079152	1.00[ASW][hapmap];0.87[LWK][hapmap];0.96[MKK][hapmap];0.81[AFR][1000 genomes]
rs17079196	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs17079201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079203	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs17165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17573446	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17574179	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.91[EUR][1000 genomes]
rs17574269	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs17575449	1.00[MEX][hapmap]
rs17635492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17636252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs17636431	1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs35476086	0.85[AFR][1000 genomes]
rs7453460	0.91[EUR][1000 genomes]
rs9489188	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9489189	1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv966655	chr6:117758375-117766294	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117762000-117767800	Enhancers	Osteobl	bone
2	chr6:117763000-117772200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:117763400-117767200	Weak transcription	HSMMtube	muscle
4	chr6:117763400-117767800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:117763400-117767800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:117763400-117767800	Weak transcription	NH-A	brain
7	chr6:117764200-117768200	Weak transcription	NHLF	lung
8	chr6:117764400-117767400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:117764400-117767400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:117764400-117767800	Weak transcription	A549	lung
11	chr6:117765200-117766400	Enhancers	HMEC	breast
12	chr6:117765200-117767400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:117765400-117766400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:117765600-117766200	Enhancers	Hela-S3	cervix
15	chr6:117765800-117766200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:117765800-117766200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:117765800-117766200	Enhancers	NHEK	skin
18	chr6:117765800-117766400	Enhancers	NHDF-Ad	bronchial
19	chr6:117766000-117766200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:117766000-117767000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:117766000-117767800	Weak transcription	HSMM	muscle

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