Variant report

Variant	rs10484457
Chromosome Location	chr6:113786636-113786637
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10080444	0.83[ASN][1000 genomes]
rs10080706	0.83[ASN][1000 genomes]
rs1033390	0.91[CHB][hapmap];0.86[CHD][hapmap];0.80[ASN][1000 genomes]
rs1033391	0.91[CHB][hapmap];0.86[CHD][hapmap];0.80[ASN][1000 genomes]
rs10484459	0.80[ASN][1000 genomes]
rs10872097	0.80[ASN][1000 genomes]
rs11153418	0.80[ASN][1000 genomes]
rs11153422	0.88[AFR][1000 genomes]
rs12203134	0.80[ASN][1000 genomes]
rs12214468	0.91[CHB][hapmap];0.86[CHD][hapmap];0.84[YRI][hapmap];0.80[ASN][1000 genomes]
rs2092086	0.83[ASN][1000 genomes]
rs2092087	0.82[ASN][1000 genomes]
rs2103538	0.82[ASN][1000 genomes]
rs2142641	0.83[ASN][1000 genomes]
rs2179118	0.83[ASN][1000 genomes]
rs2294231	0.91[CHB][hapmap];0.86[CHD][hapmap];0.84[YRI][hapmap]
rs2348304	0.80[ASN][1000 genomes]
rs4380793	0.83[ASN][1000 genomes]
rs4435975	0.83[ASN][1000 genomes]
rs4945948	0.80[ASN][1000 genomes]
rs58045871	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568791	0.82[ASN][1000 genomes]
rs6914474	0.80[ASN][1000 genomes]
rs6914499	0.80[ASN][1000 genomes]
rs6938194	0.82[ASN][1000 genomes]
rs764733	0.83[ASN][1000 genomes]
rs764734	0.83[ASN][1000 genomes]
rs766329	0.83[ASN][1000 genomes]
rs7738898	0.82[ASN][1000 genomes]
rs7751070	0.88[AFR][1000 genomes]
rs7758769	0.91[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.80[ASN][1000 genomes]
rs7759869	0.91[CHB][hapmap];0.86[CHD][hapmap];0.80[ASN][1000 genomes]
rs7771550	0.83[ASN][1000 genomes]
rs7771810	0.83[ASN][1000 genomes]
rs7772108	0.82[ASN][1000 genomes]
rs7772790	0.83[ASN][1000 genomes]
rs7776236	0.91[CHB][hapmap];0.86[CHD][hapmap];0.80[ASN][1000 genomes]
rs9320453	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs9320455	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs9320456	0.80[ASN][1000 genomes]
rs9320458	0.82[ASN][1000 genomes]
rs9374404	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9481352	0.91[CHB][hapmap]
rs9481355	0.83[ASN][1000 genomes]
rs9481356	0.83[ASN][1000 genomes]
rs9481357	0.83[ASN][1000 genomes]
rs9481358	0.83[ASN][1000 genomes]
rs9481359	0.83[ASN][1000 genomes]
rs9481360	0.83[ASN][1000 genomes]
rs9481361	0.83[ASN][1000 genomes]
rs9481365	0.83[ASN][1000 genomes]
rs9488184	0.80[ASN][1000 genomes]
rs9488187	0.83[ASN][1000 genomes]
rs9488189	0.83[ASN][1000 genomes]
rs9488190	0.83[ASN][1000 genomes]
rs9488191	0.83[ASN][1000 genomes]
rs9488195	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10484457	ZUFSP	cis	parietal	SCAN
rs10484457	RFPL4B	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113785000-113787000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:113785000-113787200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:113785200-113788800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:113785200-113788800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr6:113785400-113786800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:113785400-113787000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:113785400-113787000	Enhancers	HMEC	breast
8	chr6:113785400-113787000	Enhancers	HUVEC	blood vessel
9	chr6:113785400-113787000	Enhancers	NHEK	skin
10	chr6:113785400-113787000	Enhancers	NHLF	lung
11	chr6:113785400-113787000	Enhancers	Osteobl	bone
12	chr6:113785400-113787200	Enhancers	Hela-S3	cervix
13	chr6:113785400-113787400	Enhancers	NHDF-Ad	bronchial
14	chr6:113785400-113787800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:113785600-113787000	Enhancers	A549	lung
16	chr6:113785600-113787000	Enhancers	NH-A	brain
17	chr6:113785800-113786800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:113786000-113787000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:113786400-113786800	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr6:113786400-113789000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:113786600-113791800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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