Variant report
| Variant | rs9374404 |
|---|---|
| Chromosome Location | chr6:113790579-113790580 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10080444 | 0.82[ASN][1000 genomes] |
| rs10080706 | 0.82[ASN][1000 genomes] |
| rs10484457 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11153422 | 0.81[AFR][1000 genomes] |
| rs2092086 | 0.82[ASN][1000 genomes] |
| rs2092087 | 0.81[ASN][1000 genomes] |
| rs2103538 | 0.81[ASN][1000 genomes] |
| rs2142641 | 0.82[ASN][1000 genomes] |
| rs2179118 | 0.82[ASN][1000 genomes] |
| rs4380793 | 0.82[ASN][1000 genomes] |
| rs4435975 | 0.82[ASN][1000 genomes] |
| rs58045871 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6568791 | 0.81[ASN][1000 genomes] |
| rs6938194 | 0.80[ASN][1000 genomes] |
| rs764733 | 0.82[ASN][1000 genomes] |
| rs764734 | 0.82[ASN][1000 genomes] |
| rs766329 | 0.82[ASN][1000 genomes] |
| rs7738898 | 0.81[ASN][1000 genomes] |
| rs7751070 | 0.81[AFR][1000 genomes] |
| rs7771550 | 0.82[ASN][1000 genomes] |
| rs7771810 | 0.82[ASN][1000 genomes] |
| rs7772108 | 0.81[ASN][1000 genomes] |
| rs7772790 | 0.82[ASN][1000 genomes] |
| rs9320458 | 0.81[ASN][1000 genomes] |
| rs9481355 | 0.82[ASN][1000 genomes] |
| rs9481356 | 0.82[ASN][1000 genomes] |
| rs9481357 | 0.82[ASN][1000 genomes] |
| rs9481358 | 0.82[ASN][1000 genomes] |
| rs9481359 | 0.82[ASN][1000 genomes] |
| rs9481360 | 0.82[ASN][1000 genomes] |
| rs9481361 | 0.82[ASN][1000 genomes] |
| rs9481365 | 0.82[ASN][1000 genomes] |
| rs9488187 | 0.82[ASN][1000 genomes] |
| rs9488189 | 0.82[ASN][1000 genomes] |
| rs9488190 | 0.82[ASN][1000 genomes] |
| rs9488191 | 0.82[ASN][1000 genomes] |
| rs9488195 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916294 | chr6:113518489-113904305 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034256 | chr6:113703567-113793790 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1021815 | chr6:113703567-113799956 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv518991 | chr6:113760526-113799618 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv522088 | chr6:113788356-113809585 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:113786600-113791800 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 2 | chr6:113787000-113791200 | Weak transcription | Osteobl | bone |
| 3 | chr6:113787200-113791800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 4 | chr6:113787400-113791600 | Weak transcription | NHDF-Ad | bronchial |
