Variant report

Variant	rs10484484
Chromosome Location	chr6:132581044-132581045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132580912-132581496	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11154669	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.85[TSI][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11154670	1.00[CEU][hapmap];0.85[JPT][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11751658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11752684	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11755929	1.00[CEU][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11757956	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12528474	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12528986	0.81[JPT][hapmap]
rs12664012	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12664029	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12665387	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1321262	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1406930	1.00[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1406931	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.83[LWK][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1547609	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1547610	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17061084	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.80[JPT][hapmap];0.83[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17061091	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1923029	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1983568	0.97[GIH][hapmap]
rs4262208	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4502948	1.00[CEU][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59785713	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6941654	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9385600	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132569600-132581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132575400-132588400	Weak transcription	Aorta	Aorta
3	chr6:132580800-132581800	Weak transcription	Fetal Muscle Leg	muscle

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